Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00441 ATGGGTGGGTGTTTGTCAAACTGCCTAATTATTCCCAAAGTCTCTTCGTCTGTTGCTCCACCTCCTCCTCCTACCGCCAAAGTTATCTCTTTACAAGGACATCTCCGGGAATACCCTGTTCCTATATCCGTCTCCCGCGTTCTTCAAACCGAAAATTCATCTTCTTCCACTTCCGACTCTTTTCTATGCAACTCCGACCGCTTATTCTACGATGATTTCATTCCGTCTTTGCCTCTCGACCACCAGCTCCACCCCAATCAGATCTATTTCATCCTTCCTTCCTCCAACCTCCACCACCGATTGACCGCCCCTGATATGGCCGCCTTAGCGGTCAAAGCCACCCTCGCCCTCCAGAATGCCTCCACCAACAACCTCCATCTCCCTCATAATAAGGGTCGTCGTCGTCGTATTTCTCCCCTCTTTGATCTTGATAGCCCCAACGACCAACAAAACGAACACGAACACGAACACGTCCTCTCCACTAACTCTAACTCCAAAAACAACACCGCCCCCTCTTCCTCCGTTAAAAAATTGCAGAGATTGACATCCAGAAGGGCAAAAATGGCAGAAGATATTGCGTTAGAAAAAGAACACGAAGGAGAATCGGAGTCCTCCTGTCTTACAGCAGGACAATTGCAAGAAGCAGTTGACGCTCATCCTGATGATCCCTCATCCCATTTCAAACTCGGGATTTTCATGTGGGAAAATGGAGCAAGCCACGATAAGGCGGCTGCCGCCGATCATTTTCTGAAATCAGCGAAATTAGACCCTGGGAATGCTGCCGCTTTCAAGTATCTAGGGGATTATTACGCCACATTTTCTGTCGATATTCAAAGGGCTCTCAAGTGCTACCAAAGAGCTGTCAGTCTCGACGTCGACGATTTCCACTCTGGAGAAGCATTGTGCGATCTGTTGCATCACGAAGGAAAGGAGAGTATAGAGGTTGCCGTATGCAAAGAGGCTTCCTCTAAGTCACCCAAAGCCTTCTGGGCTTTCCGGAGGTTGGGATATTTGCAGGTTTATCAAAATAAATGGACTGAAGCTGTCTCAAGTCTTCAGCATGCCATTCGAGGATATCCTCATTGTGCTGATTTGTGGGAAGCCCTGGGTCTTGCATACCAGCGACTTGGCAGGTTTACTGCTGCAATTAAGTCTTATGCACGGGCTATTGAAATTGAAGGAGATAGAATTCTTGCTTGGATTGAGAGTGGAAACATCTTCTTGATGCTTGGTTTGTTCAAAAAAGGAGTTGAACACTTTCAGCAAGCTCTAGAGATATCACCTAAAAGTATTACTGCACAATTTGGGCTCTCTTCAGGGCTTCTTGGTTGGGCGAAGGAATACATTAATAGGGGGGCGTTTAAATGGGCATCCTTTCTGTTAGAGGAAGCATCTAAAGTTGCAAGAGGAAGTACTCATTTAGCTGGAAACTCATCATGTATCTGGAAGTTGCTTGGAGATATTCAGCACACGTATGCAAAATGTTATCCATGGATGGAGGACAACTGGGGACAATGCTCAGAATCCTTTAGAACTTCTATCCTTTCCTGGAAGCAGACTCGCATGTTGGCTTTATTTTCTGCCAAAAGTTCCTATCAGCAAGCTCTGCACTTGGCTCCGTGGGAAGCTAACATTTACACAGATATTGCTATTACTTTAGATAATATTTCATCTTTGAATGATAATTCTGGACCTGGATTCAATTCCTGGCAGATATCTGAAAAGATGACACTAGGGGCCTTGATGCTCGAGGGTGACAATCATGAATTCTGGGTGGCAATGGGATGCATCTCTAACCATGCTGCGTTGAAGCAACATGCTTTTATAAGGGCATTGCAGTTAGATGGATCTTTAGCTGGAGCATGGGCTTATCTTGGGAAGCTATACTGGAATAGGTGCGAGAAGCAATTGGCGAGACAGGCTTTTGATTATGCCAGAAGTATAGATCCTTCTCTAGCATTACCCTGGGCTGGCATGTCAGCCGATTTGAACGTTAGGGAGTCCACATCAGATGAAGCATTTGAGAGCTGTTTGAGAGCTGCACAAATACTACCCGTGGCGGAATTCCAAATTGGTCTTGCCAAGCTTTCTCTGCAGGCAGGCCATCTTTCATCTCCACAGGTGTTTGGAGCTATACGTCAGGCTGTTCAACTGGCACCTTGTTACCCCGAATCCTATAATCTAAATGGATTAGCTTTTGAGGCACAATTAGATTATCAATCTGCTGTTGCTGCTTATCGTTTGGCACACCTCACAATTAGCCACTTTTCAGATAGAGTTCCAAGGTCTCATGTCAGAGATATATCGATCAACTTAGCGAGATCACTCTGCATGGTAGGAAATTTCTTTGAAGCTTTGCAGGAATGTGAAAATTTGAGTACAGAAGGCATGCTCGACATTGAAGGTTTGCAGGTTTATGCTTTCTCTCTATGGAAACTAGGAAAGAATGACCAGGCCCTTAGTGCTGTGAGAACACTTGCTTCTGGCATCTCTACCATGGAAAGCACACGTACTGCTGCATCTATTGATTTCATATGCAGATTGTTGTGTTCAATATCTGGATTGGATTCTGCAATTAACAGTATTACGAAGATGCCGACCAATTTTTTCCAGAGTTCAAAATTGAGTTTTGTAGTAGCTGCTGTTCATGCCCTTGATCAGGGTGATCGGCTTGAGGCCATTGTCTTAAGCAGCCGTTCCTGCCTCCAATCTCATGAAGAGATTACTAGAATGCACAGTTTGATTGCTCTTTCTAAGCTGATCAAATATCGAACAAATAACTGCCTTGGATTTCTCAATGGAGTGATGCATCTTCGAAAAGCTCTTCATGCATACCCCAGCAGTAGTTCGATCAGGAACTTGCTTGGTTATCTTTTGCTGTCCAACGAAGAAAGGGATGACAATCACACAGCTACTAGGTGCTGCAACATGTTGTATGGTTTTGACCAACAGAACAAAGGTCTGAAATCTGCGTATGAAATTCATGGTGCTGGAGCTGTGGCCTGCTATACAATTGGCACGAGTCATCCGAGGTTTTCTTTCCCAACATGTTCATATCAGTGCCGGAACGGGATTGGGACCATCCGGCATCTTCAAAAATGCCTACGTCAAGAGCCATGGAATTATGATGCTCGATATCTTCTTATACTAAACATTCTGCAAAAAGCACGTGAAGAAAGATTTCCCTGTCATCTGTGTGTGACTATTGAGCGACTAATCTTGGTTGCCTTTTCTGATGAAGCATATTTTACGAAAGAGGTGTCTCATCAATATAAGAAGTTTCAGCTTCTACTTTGTGCCTCTGAGATCAGTTTGCAAGGTGGTGACCAAATTAAATGCATCAACTATGCCAAAGCTGCTACCTCTATGGCACTTCCTGAAATTTATCTTTTTTATGCGCACTTGTTACTGTGCCGAGCCTATGCTGCAGAAAATGATTCTAACAACCTCCGTAAAGAGTTCATGACATGTTTGAATTTGAAGACAGATAACTATCTTGGATGTGTATGTCTTAAATTCATAGCATCTCGATACGAGCTTCACGATGAATCCAACAGCTTAGAACTTAGTTTGAAGAAATGGTCGGTAGAGAGCAAGAATCTGCAACACATGGTAATACCCATGTTTGTCGATGGTTTGATATCTTTTAGGAGTCAGGATTTTATGGCTGCAGAGAAGTATTTTGCACAAGCTTGTTTTTCTGGACATGATGGCTGTCTCTTCCTCTGTCATGGCGTAACCTGCATGGAACTTGCAAAGAAGCTTTGCAGTCCTCATTTTTTGAGGCTGGCTGTGAACAGTCTCCTTAAAGCTCAAGTGATATCTGTTCCAATACCAATTGTCTCGATCATGCTGGCACAAGCAGAAGGGAGTCTTGGTTTGAAGGAAAATTGGGAGTCAGGCCTTCGTTTGGAATGGTTCTCGTGGCCACCAGATATGAGGTCTGCGGAGATCTTGTTTCAAATGCATCTGCTTGCAAAACAGTCAAAAGTTGATTCTGATCAATTGAGGGTTGAATTATGTCAGTCTCCTCTGAGATGGGTTCTTCGCGCTATCCATGTAAACCCTTCTTGTGTGAGATATTGGAATGTGCTCCAAAGCTTGTGGAATGAGGGATGA 4119 44.14 MGGCLSNCLIIPKVSSSVAPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNASTNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHVLSTNSNSKNNTAPSSSVKKLQRLTSRRAKMAEDIALEKEHEGESESSCLTAGQLQEAVDAHPDDPSSHFKLGIFMWENGASHDKAAAADHFLKSAKLDPGNAAAFKYLGDYYATFSVDIQRALKCYQRAVSLDVDDFHSGEALCDLLHHEGKESIEVAVCKEASSKSPKAFWAFRRLGYLQVYQNKWTEAVSSLQHAIRGYPHCADLWEALGLAYQRLGRFTAAIKSYARAIEIEGDRILAWIESGNIFLMLGLFKKGVEHFQQALEISPKSITAQFGLSSGLLGWAKEYINRGAFKWASFLLEEASKVARGSTHLAGNSSCIWKLLGDIQHTYAKCYPWMEDNWGQCSESFRTSILSWKQTRMLALFSAKSSYQQALHLAPWEANIYTDIAITLDNISSLNDNSGPGFNSWQISEKMTLGALMLEGDNHEFWVAMGCISNHAALKQHAFIRALQLDGSLAGAWAYLGKLYWNRCEKQLARQAFDYARSIDPSLALPWAGMSADLNVRESTSDEAFESCLRAAQILPVAEFQIGLAKLSLQAGHLSSPQVFGAIRQAVQLAPCYPESYNLNGLAFEAQLDYQSAVAAYRLAHLTISHFSDRVPRSHVRDISINLARSLCMVGNFFEALQECENLSTEGMLDIEGLQVYAFSLWKLGKNDQALSAVRTLASGISTMESTRTAASIDFICRLLCSISGLDSAINSITKMPTNFFQSSKLSFVVAAVHALDQGDRLEAIVLSSRSCLQSHEEITRMHSLIALSKLIKYRTNNCLGFLNGVMHLRKALHAYPSSSSIRNLLGYLLLSNEERDDNHTATRCCNMLYGFDQQNKGLKSAYEIHGAGAVACYTIGTSHPRFSFPTCSYQCRNGIGTIRHLQKCLRQEPWNYDARYLLILNILQKAREERFPCHLCVTIERLILVAFSDEAYFTKEVSHQYKKFQLLLCASEISLQGGDQIKCINYAKAATSMALPEIYLFYAHLLLCRAYAAENDSNNLRKEFMTCLNLKTDNYLGCVCLKFIASRYELHDESNSLELSLKKWSVESKNLQHMVIPMFVDGLISFRSQDFMAAEKYFAQACFSGHDGCLFLCHGVTCMELAKKLCSPHFLRLAVNSLLKAQVISVPIPIVSIMLAQAEGSLGLKENWESGLRLEWFSWPPDMRSAEILFQMHLLAKQSKVDSDQLRVELCQSPLRWVLRAIHVNPSCVRYWNVLQSLWNEG* 1373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3372965 3385806 + Chy7G132710.1 Chy07g00441 230452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00441 1372 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 37 174 1061 - -
Chy07g00441 1372 SUPERFAMILY TPR-like 583 749 IPR011990 GO:0005515
Chy07g00441 1372 MobiDBLite consensus disorder prediction 138 160 - -
Chy07g00441 1372 Gene3D Tetratricopeptide repeat domain 209 273 IPR011990 GO:0005515
Chy07g00441 1372 Gene3D Tetratricopeptide repeat domain 575 700 IPR011990 GO:0005515
Chy07g00441 1372 SUPERFAMILY TPR-like 212 433 IPR011990 GO:0005515
Chy07g00441 1372 ProSiteProfiles TPR repeat profile. 619 652 IPR019734 GO:0005515
Chy07g00441 1372 SUPERFAMILY TPR-like 713 824 IPR011990 GO:0005515
Chy07g00441 1372 Gene3D Tetratricopeptide repeat domain 705 830 IPR011990 GO:0005515
Chy07g00441 1372 Gene3D Tetratricopeptide repeat domain 274 561 IPR011990 GO:0005515
Chy07g00441 1372 ProSiteProfiles Rhodanese domain profile. 287 354 IPR001763 -
Chy07g00441 1372 SMART tpr_5 619 652 IPR019734 GO:0005515
Chy07g00441 1372 SMART tpr_5 329 362 IPR019734 GO:0005515
Chy07g00441 1372 SMART tpr_5 260 294 IPR019734 GO:0005515
Chy07g00441 1372 SMART tpr_5 723 756 IPR019734 GO:0005515
Chy07g00441 1372 SMART tpr_5 363 396 IPR019734 GO:0005515
Chy07g00441 1372 SMART tpr_5 397 430 IPR019734 GO:0005515
Chy07g00441 1372 Pfam PADRE domain 1 187 IPR025322 -
Chy07g00441 1372 Pfam Tetratricopeptide repeat 335 390 - -
Chy07g00441 1372 MobiDBLite consensus disorder prediction 161 179 - -
Chy07g00441 1372 MobiDBLite consensus disorder prediction 138 179 - -
Chy07g00441 1372 ProSiteProfiles TPR repeat region circular profile. 363 393 - -
Chy07g00441 1372 ProSiteProfiles TPR repeat profile. 363 396 IPR019734 GO:0005515
Chy07g00441 1372 PANTHER SUPERKILLER 3 PROTEIN-RELATED 174 1061 IPR039226 GO:0006401|GO:0055087
Chy07g00441 1372 ProSiteProfiles TPR repeat profile. 397 430 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00441 K12600 SKI3, TTC37; superkiller protein 3 - csv:101220693 2355.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00877 Chy-Chr5:12944080 Chy07g00441 Chy-Chr7:3372965 2.32E-10 dispersed
Chy07g00441 Chy-Chr7:3372965 Chy11g00166 Chy-Chr11:1631135 1.66E-15 dispersed
Chy07g00441 Chy-Chr7:3372965 Chy02g00957 Chy-Chr2:6348759 1.14E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g20 . Blo12g00837 . Bda03g00338 . Bpe04g00298 Bma04g00307 Bma01g02430 . . Cma01g02054 . Car01g01618 . . . . . . . . . . . . . . . . . . . . . . Lsi04g02439 Csa04g02753 . . . . . . . . . . . Cmo01g02110 . . . . . . Cpe02g00004 . . . . . . . Cla11g01865 Cam11g1935 Cec11g1960 Cco11g1974 Clacu11g2100 Cmu11g1902 Cre11g2310 . . Chy07g00441 Cme07g00009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007064 1 4 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 2 1 1 0 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00441 Chy_Chr07 FPKM 6.45977 7.565344 1.164638 1.223404 5.881298 5.484247 5.475031 0.0 0.0 0.0