Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00444 ATGGTGAAGGAGACAGAATACTATGATGTGCTTGGAGTCAGCCCCGCGGCTACGGAAGCCGAAATCAAGAAAGCTTATTACATCAAGGCACGGCAGGTTCATCCAGATAAAAACCCAAGTGACCCTCTGGCAGCACAGAAATTTCAGGTTCTGGGAGAAGCTTACCAAGTATTAAGTGATCCAGCTCAAAGACAAGCCTATGATGCTCATGGGAAGTCTGGAATCTCAACTGATGCGATTATTGATCCTGCAGCGATTTTTGCAATGCTTTTTGGAAGTGAACTTTTTGAGGAATACATTGGTGAGCTTGCCATGGCATCGATGGCCTCTTTGGACATTTTCACTGAAGGGGAGCAATTTGATGCTAAACGGTTGCAGGAGAAAATGAGGATTGTCCAAAAGGAAAGAGAAGAAAAGCTTTCAGAGATTCTGAAAGGTCGTCTGAATCAGTATGTTCAAGGAAACAAAGATGATTTTGTTAATCATGCTGAAGCTGAAGTAGCAAGACTCTCCAACGCAGCCTATGGAGTTGACATGTTAAACACAATTGGCTATATATATGCCAGACAGGCTGCTAAAGAGCTTGGGAAGAAGGCAATTTATTTGGGCGTGCCATTTGTTGCTGAGTGGTTTAGAAACAAAGGACACTTTATAAAATCCCAGGTCACAGCAGCCACAGGTGCTATTGCATTGATTCAACTGCAGGAGGACATGAAAAAGCAACTTAGTGCTGAAGGAAATTATACTGAAGAAGAGCTTGAAGAGTACGTGCAATCTCATAAAAAATTGATGATTGATTCCCTATGGAAATTGAACGTGGCTGACATTGAGGCCACTCTTTCCCGTGTCTGTCAACAGGTTCTTCAAGACAACAACGTCAAGAAGGAGGAGCTCCGTGCAAGAGCGAAGGGATTGAAAACTCTTGGTAAAATTTTCCAGAGGGTTAAGTCAACCAATGGAAATGAGGGTGAACCGGCAGTAAAAGGCTCAGTAGACAAACTGAATGGAAGTGAATCAAGTCATGATACTTCTCCAATTTCAACATTGAAATCTTCCGGCTATGAAGAAACATCTTTTGCAACACAGAGTCCCTATGTGGAGGCTCCCAATTTTGCAGGTGCACACTTAAATAACTATTTCCCCAGGCCAACACCCCCTCCAGGTGCACAGAGACATCCGTCCTCCAGCAGGGATTGA 1197 43.61 MVKETEYYDVLGVSPAATEAEIKKAYYIKARQVHPDKNPSDPLAAQKFQVLGEAYQVLSDPAQRQAYDAHGKSGISTDAIIDPAAIFAMLFGSELFEEYIGELAMASMASLDIFTEGEQFDAKRLQEKMRIVQKEREEKLSEILKGRLNQYVQGNKDDFVNHAEAEVARLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFVAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKKQLSAEGNYTEEELEEYVQSHKKLMIDSLWKLNVADIEATLSRVCQQVLQDNNVKKEELRARAKGLKTLGKIFQRVKSTNGNEGEPAVKGSVDKLNGSESSHDTSPISTLKSSGYEETSFATQSPYVEAPNFAGAHLNNYFPRPTPPPGAQRHPSSSRD* 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3402014 3419767 - Chy7G132740.1 Chy07g00444 230455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00444 398 MobiDBLite consensus disorder prediction 333 361 - -
Chy07g00444 398 Gene3D DnaJ domain 1 83 IPR036869 -
Chy07g00444 398 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 363 - -
Chy07g00444 398 CDD DnaJ 6 60 IPR001623 -
Chy07g00444 398 Coils Coil 122 142 - -
Chy07g00444 398 MobiDBLite consensus disorder prediction 316 361 - -
Chy07g00444 398 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Chy07g00444 398 MobiDBLite consensus disorder prediction 374 398 - -
Chy07g00444 398 Pfam X-domain of DnaJ-containing 133 324 IPR026894 -
Chy07g00444 398 SUPERFAMILY Chaperone J-domain 2 99 IPR036869 -
Chy07g00444 398 SMART dnaj_3 5 63 IPR001623 -
Chy07g00444 398 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Chy07g00444 398 PANTHER CHAPERONE PROTEIN DNAJ 10-LIKE ISOFORM X1 1 363 - -
Chy07g00444 398 PRINTS DnaJ domain signature 43 63 IPR001623 -
Chy07g00444 398 PRINTS DnaJ domain signature 63 82 IPR001623 -
Chy07g00444 398 PRINTS DnaJ domain signature 26 41 IPR001623 -
Chy07g00444 398 PRINTS DnaJ domain signature 8 26 IPR001623 -
Chy07g00444 398 Pfam DnaJ domain 6 68 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00444 - - - csv:101221160 770.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00661 Chy-Chr1:4736421 Chy07g00444 Chy-Chr7:3402014 2.94E-09 dispersed
Chy03g00571 Chy-Chr3:8141145 Chy07g00444 Chy-Chr7:3402014 9.30E-149 dispersed
Chy07g00444 Chy-Chr7:3402014 Chy11g00360 Chy-Chr11:3289153 1.04E-133 dispersed
Chy07g00444 Chy-Chr7:3402014 Chy04g00217 Chy-Chr4:1978907 1.80E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00444 Chy_Chr07 FPKM 30.890335 27.636156 33.426384 35.221165 19.185303 19.706978 19.280905 31.737364 31.698816 36.308483