Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy07g00469 | ATGGATTCCCTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAAACAAAATCGTCAGAAGGAGGATCAATCGCTTGATTCTTGTTCCCTCCCAGCGAAGAAGCGAAAGGAGTCTCGTGATTCTTCGTTGCTCCTAATTCCTGACGCTTCTCCTTACTGCTTGCCCACCAAGAAAAGGGTGTGGGCCCTTCACCCTGATTTTGCCCCGGAGTCATTGGATCTCAATGTTGAATACAAGCCTCATCCTCTGGAGGAAGAATCCATATCGAAATCAGAATTAGAGGGAGACAAAAAGGAGGAAGAGGATAAGGGAAATGAAAAGGAAAAGGAAGTTTCTGATGTTGAAATGGAGATTCAAGAGATTGAAACAGTCCAAGATGAAGAGGAAGATGATGGGATTCTTTGTGCGATTTGTCAAAGCACAGACGGGGATCCTTCAGATCCAATTGTGTTCTGCGATGGATGTGATTTGATGGTACACGCTTCATGTTATGGTAATCCTCTTGTAAAGAGTATACCAGAAGGAGATTGGTTCTGTAGCCAATGCTTAGCTTCTTCGTCTTCCAAGACGGAGAAGAAGGTTACAGAAACACCATTTTCATGCTGCCTCTGTCCTCTGAAAGGAGGGGCCATGAAGCCCACGAACGACGGCCAATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTTTTTGAGGACCCAGAAGGAAGAGAAGGGATTGATTGCTCGATGATTCTGAAGAGGAGATGGAAAACCAAATGTTATATCTGCAAAACTTCTAGCGGTTGTTCTATTGACTGCTCAGAGCCTAAATGTAGTTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTATGTATTGAGTACCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGGTTTTGTAGAAACCATACAGACTTGTGGAAGAAGGTAAATTCACGTTCTTTATCCTTTGAGCTAAATATGTTATGCTGCATAGGTCAAACAACTTTGGCTTGGTTAGAAGATAGTGGTCCATGTCTGATGAGTTTCTATCTTTGTTTGCAGTCGTTTGTTTGTTCTTCTTGCATGCAATAG | 1113 | 43.04 | MDSLHGLPPLKRLRILQEQEQKQNRQKEDQSLDSCSLPAKKRKESRDSSLLLIPDASPYCLPTKKRVWALHPDFAPESLDLNVEYKPHPLEEESISKSELEGDKKEEEDKGNEKEKEVSDVEMEIQEIETVQDEEEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSIPEGDWFCSQCLASSSSKTEKKVTETPFSCCLCPLKGGAMKPTNDGQWAHIVCGLYVPEVFFEDPEGREGIDCSMILKRRWKTKCYICKTSSGCSIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKVNSRSLSFELNMLCCIGQTTLAWLEDSGPCLMSFYLCLQSFVCSSCMQ* | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3749165 | 3750277 | + | Chy7G132990.1 | Chy07g00469 | 230480 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy07g00469 | 370 | SUPERFAMILY | FYVE/PHD zinc finger | 132 | 198 | IPR011011 | - | |
Chy07g00469 | 370 | PANTHER | PHD FINGER PROTEINS | 99 | 326 | - | - | |
Chy07g00469 | 370 | Coils | Coil | 90 | 138 | - | - | |
Chy07g00469 | 370 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 197 | IPR013083 | - | |
Chy07g00469 | 370 | SMART | PHD_3 | 141 | 190 | IPR001965 | - | |
Chy07g00469 | 370 | SMART | PHD_3 | 262 | 317 | IPR001965 | - | |
Chy07g00469 | 370 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 205 | 317 | IPR034732 | - | |
Chy07g00469 | 370 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Chy07g00469 | 370 | MobiDBLite | consensus disorder prediction | 90 | 120 | - | - | |
Chy07g00469 | 370 | CDD | PHD_BRPF_JADE_like | 141 | 189 | - | - | |
Chy07g00469 | 370 | MobiDBLite | consensus disorder prediction | 15 | 48 | - | - | |
Chy07g00469 | 370 | Pfam | PHD-zinc-finger like domain | 207 | 304 | - | - | |
Chy07g00469 | 370 | Pfam | PHD-finger | 142 | 190 | IPR019787 | - | |
Chy07g00469 | 370 | ProSiteProfiles | Zinc finger PHD-type profile. | 139 | 192 | IPR019787 | - | |
Chy07g00469 | 370 | PANTHER | PHD FINGER PROTEINS | 3 | 98 | - | - | |
Chy07g00469 | 370 | Coils | Coil | 10 | 30 | - | - | |
Chy07g00469 | 370 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 319 | IPR013083 | - | |
Chy07g00469 | 370 | CDD | ePHD | 208 | 316 | - | - | |
Chy07g00469 | 370 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 3 | 98 | - | - | |
Chy07g00469 | 370 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 99 | 326 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy07g00469 | Chy-Chr7:3749165 | Chy11g01890 | Chy-Chr11:25100017 | 3.37E-20 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18293 | PF13832 | zf-HC5HC2H_2 | 5.90E-29 | CL0390 | Chy | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy07g00469 | K11380 | - | csv:101203744 | 623.624 |