Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00469 ATGGATTCCCTCCATGGCTTACCTCCTCTCAAAAGGCTCAGAATCCTTCAAGAACAAGAACAAAAACAAAATCGTCAGAAGGAGGATCAATCGCTTGATTCTTGTTCCCTCCCAGCGAAGAAGCGAAAGGAGTCTCGTGATTCTTCGTTGCTCCTAATTCCTGACGCTTCTCCTTACTGCTTGCCCACCAAGAAAAGGGTGTGGGCCCTTCACCCTGATTTTGCCCCGGAGTCATTGGATCTCAATGTTGAATACAAGCCTCATCCTCTGGAGGAAGAATCCATATCGAAATCAGAATTAGAGGGAGACAAAAAGGAGGAAGAGGATAAGGGAAATGAAAAGGAAAAGGAAGTTTCTGATGTTGAAATGGAGATTCAAGAGATTGAAACAGTCCAAGATGAAGAGGAAGATGATGGGATTCTTTGTGCGATTTGTCAAAGCACAGACGGGGATCCTTCAGATCCAATTGTGTTCTGCGATGGATGTGATTTGATGGTACACGCTTCATGTTATGGTAATCCTCTTGTAAAGAGTATACCAGAAGGAGATTGGTTCTGTAGCCAATGCTTAGCTTCTTCGTCTTCCAAGACGGAGAAGAAGGTTACAGAAACACCATTTTCATGCTGCCTCTGTCCTCTGAAAGGAGGGGCCATGAAGCCCACGAACGACGGCCAATGGGCTCATATTGTTTGTGGACTCTATGTTCCTGAGGTGTTTTTTGAGGACCCAGAAGGAAGAGAAGGGATTGATTGCTCGATGATTCTGAAGAGGAGATGGAAAACCAAATGTTATATCTGCAAAACTTCTAGCGGTTGTTCTATTGACTGCTCAGAGCCTAAATGTAGTTTGGCTTTTCATGTTACTTGTGGGTTGAAGGAGGATCTATGTATTGAGTACCAAGAAGGAAGAAGATCTGGTGCTATTGTAGCTGGGTTTTGTAGAAACCATACAGACTTGTGGAAGAAGGTAAATTCACGTTCTTTATCCTTTGAGCTAAATATGTTATGCTGCATAGGTCAAACAACTTTGGCTTGGTTAGAAGATAGTGGTCCATGTCTGATGAGTTTCTATCTTTGTTTGCAGTCGTTTGTTTGTTCTTCTTGCATGCAATAG 1113 43.04 MDSLHGLPPLKRLRILQEQEQKQNRQKEDQSLDSCSLPAKKRKESRDSSLLLIPDASPYCLPTKKRVWALHPDFAPESLDLNVEYKPHPLEEESISKSELEGDKKEEEDKGNEKEKEVSDVEMEIQEIETVQDEEEDDGILCAICQSTDGDPSDPIVFCDGCDLMVHASCYGNPLVKSIPEGDWFCSQCLASSSSKTEKKVTETPFSCCLCPLKGGAMKPTNDGQWAHIVCGLYVPEVFFEDPEGREGIDCSMILKRRWKTKCYICKTSSGCSIDCSEPKCSLAFHVTCGLKEDLCIEYQEGRRSGAIVAGFCRNHTDLWKKVNSRSLSFELNMLCCIGQTTLAWLEDSGPCLMSFYLCLQSFVCSSCMQ* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3749165 3750277 + Chy7G132990.1 Chy07g00469 230480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00469 370 SUPERFAMILY FYVE/PHD zinc finger 132 198 IPR011011 -
Chy07g00469 370 PANTHER PHD FINGER PROTEINS 99 326 - -
Chy07g00469 370 Coils Coil 90 138 - -
Chy07g00469 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 197 IPR013083 -
Chy07g00469 370 SMART PHD_3 141 190 IPR001965 -
Chy07g00469 370 SMART PHD_3 262 317 IPR001965 -
Chy07g00469 370 ProSiteProfiles Extended PHD (ePHD) domain profile. 205 317 IPR034732 -
Chy07g00469 370 MobiDBLite consensus disorder prediction 1 48 - -
Chy07g00469 370 MobiDBLite consensus disorder prediction 90 120 - -
Chy07g00469 370 CDD PHD_BRPF_JADE_like 141 189 - -
Chy07g00469 370 MobiDBLite consensus disorder prediction 15 48 - -
Chy07g00469 370 Pfam PHD-zinc-finger like domain 207 304 - -
Chy07g00469 370 Pfam PHD-finger 142 190 IPR019787 -
Chy07g00469 370 ProSiteProfiles Zinc finger PHD-type profile. 139 192 IPR019787 -
Chy07g00469 370 PANTHER PHD FINGER PROTEINS 3 98 - -
Chy07g00469 370 Coils Coil 10 30 - -
Chy07g00469 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 319 IPR013083 -
Chy07g00469 370 CDD ePHD 208 316 - -
Chy07g00469 370 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 98 - -
Chy07g00469 370 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 99 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00469 Chy-Chr7:3749165 Chy11g01890 Chy-Chr11:25100017 3.37E-20 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18293 PF13832 zf-HC5HC2H_2 5.90E-29 CL0390 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00469 K11380 - csv:101203744 623.624