Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00533 ATGGCATCAACTGTTGATGAAGATGATAGGGAGCCAGCCATGGAGTCTGGCGAAGCTGATGAAGGAATAGTTGTCCGAGAAGTTTGTGCAAATGGGATCAGCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATCCAAGAGGCAGAATCTTCATTACGTGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGGAAGTTGGAATATCAGAGAGGTAATGTCGAAGGTGCTCTACGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAACGATTACAGCCTTGTATTGCTGATAAGACACCTCCAAAAAAAGGACGTTCGCGCTCTGAGTCTCAACATGCAGTTTCACAGCATGCTGCAAACCTGGTTCTTGAAGCCATATATTTAAAAGTGAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCTGCTGATGAGTGTACTAGTGTACTTGATGCTGTAGAGAAGATATTCCACCAAGGAATTCCTGATGGGCAAGTGGATAGTAGATTGCAAGATACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTTCAGGAAGCAATATCTGCCTATAGACGTGCCCTCCTAAGCCAATGGAACCTCAACAATGAAAGCTGTGCTAGAATCCAGAAAGGATTTGCTGTGTTCTTGCTTTACAGTGGAGTAGAGGCTGGTCCTCCTAGTTTAGCTGTTCAACTTGAAGGTTCATATGTACCAAAAAATAATTTGGAAGAAGCCATTCTACTTTTGATGGTTCTTGTGAAGAAATGTTACCTTGGTAAGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATATGCTCTATCCTTATGCAGTCAGACTTCTGTTTTAGCAAAACAACTTGAAGAGGTTATGCCTGGAGTATATCACCGTGTAGATCGTTGGAAGTCTTTAGCTCTTTGTTATTGTGCAGCAGGACAGAATAAAATCGCCTTAAATCTTCTGAGAAAATCTCTACACAAACATGAGCAACCAGATGATGTGGCAGCCTTATTATTGGCTGCCAAGATCTGTAGTGAGGATCCTTATCTCGCTGCTGAAGGTGTTGGTTATGCCCAGCGGGCAATGAGCAATTGTATAGAAAATGAAGAGCATTTAAAGGGTGTAGGTCTTCGCTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGTCTTCCTCAGACTTTGAGAGGTCCCGTCTTCAGTCAGAGGCGTTGAAATCCCTTGAGGCAGCAAGTGGACTGGAGAGCAACAACTTAGATTTGATGCTTGAGTTAGGAGTACAATATTCAGAGTATCGGAATTTGAATGCTGCTCTGCAATATGCAAAGAAGTTTATTGATGAAACCGGTGGCTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGCCCAGAAGAGGTTTTCTGAGGCTGAAGTGGTCACCGATGCTGCAATGGATGAAACCACAAAATGGGAACAAGGACCACTTCTCAGACTTAAGGCAAAGCTGAAGGTCTCCCAATCATTACATATGGATGCTATTGAAACTTACCGTTATCTTCTTGCGTTAGTTCAAGCACAAAAGAAATCATTTGGGCCTCTCCGGATTGTCCCTCAGGTTGAAGATGATAAAGTGAATGAGTTTGAAGTGTGGAATGGTCTAGCCAATTTGTACTCCAGCCTTTCACATTGGAAAGATGCGGAGATATGCCTAGGAAAAGCAAGAGAGCTGAAAGAGTTCTCCCCAGAAGTACTACATACTGAAGGTCTAATGTGTGAAGGACGTGAGAAAATACAAGAAGCTCTAGCTGCTTATATCAACGCTCTCCTACTCGAACCAACTTATGTTCCTTGCAAGGTTTTGATTGGTGCTCTTTGGTCGAAGGCTGGCCCAGATGCATTGCCTATAGCAAGAAGCTTACTTTCAGACGCATTGAGATTGGATCCTACCAACCGTAAGGCTTGGTTTTACTTGGGGGTCATTCATCGGGACGAAGGACGAATGGCTGATGCTATAGACTGTTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTGTTCTCTAG 2127 43.68 MASTVDEDDREPAMESGEADEGIVVREVCANGISIKTTEVEAKLDEGNIQEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPCIADKTPPKKGRSRSESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFHQGIPDGQVDSRLQDTVSQAVELLPELWKQAGCFQEAISAYRRALLSQWNLNNESCARIQKGFAVFLLYSGVEAGPPSLAVQLEGSYVPKNNLEEAILLLMVLVKKCYLGKIKWDPSVMEHLIYALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKIALNLLRKSLHKHEQPDDVAALLLAAKICSEDPYLAAEGVGYAQRAMSNCIENEEHLKGVGLRLLGLCLGKQAKMSSSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQYSEYRNLNAALQYAKKFIDETGGSVLKGWQLLALVLSAQKRFSEAEVVTDAAMDETTKWEQGPLLRLKAKLKVSQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKVNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGREKIQEALAAYINALLLEPTYVPCKVLIGALWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGVIHRDEGRMADAIDCFQAAAMLEESDPIESFSSVL* 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4417752 4422832 + Chy7G133630.1 Chy07g00533 230544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00533 708 SMART tpr_5 316 349 IPR019734 GO:0005515
Chy07g00533 708 SMART tpr_5 596 629 IPR019734 GO:0005515
Chy07g00533 708 SMART tpr_5 562 595 IPR019734 GO:0005515
Chy07g00533 708 SMART tpr_5 666 699 IPR019734 GO:0005515
Chy07g00533 708 SMART tpr_5 472 505 IPR019734 GO:0005515
Chy07g00533 708 PANTHER PROTEIN NPG1 14 707 IPR043376 -
Chy07g00533 708 MobiDBLite consensus disorder prediction 1 21 - -
Chy07g00533 708 Gene3D Tetratricopeptide repeat domain 420 704 IPR011990 GO:0005515
Chy07g00533 708 PANTHER CALMODULIN-BINDING PROTEIN 14 707 - -
Chy07g00533 708 Pfam Tetratricopeptide repeat 651 693 - -
Chy07g00533 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515
Chy07g00533 708 SUPERFAMILY TPR-like 512 696 IPR011990 GO:0005515
Chy07g00533 708 SUPERFAMILY TPR-like 316 501 IPR011990 GO:0005515
Chy07g00533 708 Gene3D Tetratricopeptide repeat domain 38 364 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00453 Chy-Chr6:3021428 Chy07g00533 Chy-Chr7:4417752 0 dispersed
Chy07g00533 Chy-Chr7:4417752 Chy04g01101 Chy-Chr4:17045098 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00533 K21843 - csv:101206641 1370.91