Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00561 ATGGCGCCATTGTTGCAGAGCTCTCAACCATGGGTGGAGAAATATCGACCGAAGCAAGTGAAAGATGTAGCGCATCAGGATGAGGTGGTTCGGGTCCTCACCAACACCCTCGAGACTGCTAGTTGTCCACATATGCTCTTCTATGGACCGCCTGGTACTGGAAAAACCACCACTGCTCTTGCAATTTCCCATCAATTATTCGGTCCCGAACTATACAAGTCTAGAGTTTTGGAGTTGAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGGACTAAGATTAAAGATTTTGCTGGTGTTGCAGTAAGCAGTGGCCAACGCCAAGGGGGTTATCCTTGTCCACCATTCAAGATAATCATTCTGGATGAGGCTGATTCAATGACTGAAGATGCTCAGAATGCCTTGAGGCGTACCATGGAAACACACTCCAAAGTGACACGATTCTTTTTTATTTGCAACTATATCAGCAGGATTATAGAGCCCCTTGCATCTAGGTGTGCAAAGTTTAGGTTTAAGCCACTTTCTGAAGAGGTTATGAGTAAGCGTATATTGCACATCGGCAATGAAGAAGGTCTTAGTCTAGACGGAGAGGCTCTTTCAACCTTAAGTTCAATCTCTCAAGGTGACCTACGTCGAGCTATCACATATTTACAGTCAGCTGCACGCTTATTTGGATCATCAATCTCTTCAAAGGATTTGGTTAACGTGTCTGGGATTATCCCTCGGGAGGTTGTTGATACACTTTTTATTGCTTGTAAAAGTGGTAACTTCGATACTGCAAACAAAGAAGTCAACAATGTACTTGCAGAAGGATATCCAGTGGCTCAAATGCTTTCACAGATATTTGAAGTGGTGATTGAAGACAATGATTTGCAAGATGAACAGAAGGCCAGGATATGCAAGAAGTTGGCCGAAGCTGACAAGCGTCTCATTGATGGTGCGGATGAATATTTGCAACTGCTCGATGTGGTAAGTCAAACAATGCAAGCTTTAAGAAGTATGCAACTGTAG 1011 43.52 MAPLLQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETASCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTEDAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNEEGLSLDGEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLVNVSGIIPREVVDTLFIACKSGNFDTANKEVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKRLIDGADEYLQLLDVVSQTMQALRSMQL* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 4772837 4789248 + Chy7G133910.1 Chy07g00561 230572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00561 336 Gene3D - 240 330 - -
Chy07g00561 336 Pfam Replication factor C C-terminal domain 241 326 IPR013748 -
Chy07g00561 336 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Chy07g00561 336 CDD HLD_clamp_RFC 174 236 - -
Chy07g00561 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Chy07g00561 336 Gene3D - 3 173 IPR027417 -
Chy07g00561 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 234 IPR027417 -
Chy07g00561 336 Gene3D - 176 239 - -
Chy07g00561 336 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Chy07g00561 336 CDD AAA 26 166 - -
Chy07g00561 336 SUPERFAMILY post-AAA+ oligomerization domain-like 240 326 IPR008921 GO:0003677|GO:0006260
Chy07g00561 336 SMART AAA_5 41 174 IPR003593 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00775 Chy-Chr3:10505716 Chy07g00561 Chy-Chr7:4772837 7.35E-55 dispersed
Chy06g01614 Chy-Chr6:18640296 Chy07g00561 Chy-Chr7:4772837 7.90E-18 dispersed
Chy06g01971 Chy-Chr6:23730863 Chy07g00561 Chy-Chr7:4772837 2.53E-63 dispersed
Chy07g00561 Chy-Chr7:4772837 Chy08g00054 Chy-Chr8:1871086 9.59E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00561 K10755 - csv:101221224 644.039