Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00604 ATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGATGTTGAAGTGCCAGTCGCGATGGGAAGGAATGAAGAAAACACTGTTAATTGTCTTGCAAATGACTTTCGGTCTGAAGAAAACGACCTATATTTGTCAGCATGTAGAATAAAAGTTGTTGGGTTTGAAGCTTCTGAGATGCGGAAGATTGTAAATATGATTCTCAGAGGTGGAGGCTTCCGATACATGTTGTTCAATGACAAATTAACACACATAATAGTTGGAGATCCGTCAGAAATGGAGAAAAAGGAGGTTAGAGATATTGCCACTTCAGGAGTCGTTCATGTGGTTAGATCCAACTGGCTTGAAGATTTTGATCGTCAGAAGAAGGAGATCCCTATTCTTGGTAGACACATGGCATATGATGAACTTATTCCTAAAGCATCTAGTAAAATGAGCACCATTGTTATGGATCGGAATAAAGTTCCAAATGTTCATCCAATCGTGCCATCAAATGTGTCAGAAGGAAATATTCATGTTAGCATTGGAAAGACGTCAATAGCAGTGGAAAGAATTGAAGAAAAAAGTGAAACAAAAGTGAATGGAGACAGGAAAATGAAATTATCCCAGAAAAGCCAACAATGTGTAGCAAATGGTACAAACAAGAGTCAAGAAAAGATGGGGCGTGATTTCATGGTTTCAAATGGGAAGTCATCATGTGTATTTACGTGGAAAATATTTTGTTTTTCTAGTTCCTTTCCAGAAGATCGGGGAGCTGAATTTGTTGAATGGATAAATCAAGGGGGAGGCGAGGTTGAAGATCACATGAAGCAGAAAGTGCACTTCACTGTTGAATGTCATGGTGGGATACCAAGGAGTACAGACGTTCACAGTACTTATGTGTCAAGTCATTGGGTTCGATCATGTTTAGAGGATGGATGTTTGTGGGATACCAATGGGCACATTCTCTATTCTCCTCTTCCTTGCTGTGTCCCTTTGCCTGGATTTGAAAACATACGGTTTTGTGTTTCACAATATGATGATAAAGACAGAGTATTGTTAAGAAATCTGTGTTTTGTACTTGGGGCCAAGTTTGTGGAGAAGCTGACAAAGAAGGTAACCCATCTAATATGCAAGTTCACCAATGGGACAAAGTATGAGGCTGCTTGTAAATGGGGGAAACAATGCATTACAGCTGAATGGATATATGAGTGTGTCAGACAGAGAAAGATTGTTTCTCTTGATTTGTATCGCCCAAAAGAAGTTACAGCTCAAGACAGAGCGGCAGGCTTATGTACTGTCAGCCAATTTCCTACTCAAGCTGCCCCAATGATAGCCAATGAAAGCGTATCCCAGTTTCCTATCCATTCTGCCATTCCGAGAGACCAATCAGCTGGAACTAACAGTAGCTGTATAGGAGCAGCTGAACGAATAAGTTCTACTAAAAAAGGCGCAAGTTCTTTGACGAAGCCATACAAAAGCGTTCACTTTTTGTTGGAAACAGTTCCACTCAATCTGACTGCAATTTGA 1506 39.97 MFSDASHFINEVDVEVPVAMGRNEENTVNCLANDFRSEENDLYLSACRIKVVGFEASEMRKIVNMILRGGGFRYMLFNDKLTHIIVGDPSEMEKKEVRDIATSGVVHVVRSNWLEDFDRQKKEIPILGRHMAYDELIPKASSKMSTIVMDRNKVPNVHPIVPSNVSEGNIHVSIGKTSIAVERIEEKSETKVNGDRKMKLSQKSQQCVANGTNKSQEKMGRDFMVSNGKSSCVFTWKIFCFSSSFPEDRGAEFVEWINQGGGEVEDHMKQKVHFTVECHGGIPRSTDVHSTYVSSHWVRSCLEDGCLWDTNGHILYSPLPCCVPLPGFENIRFCVSQYDDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFTNGTKYEAACKWGKQCITAEWIYECVRQRKIVSLDLYRPKEVTAQDRAAGLCTVSQFPTQAAPMIANESVSQFPIHSAIPRDQSAGTNSSCIGAAERISSTKKGASSLTKPYKSVHFLLETVPLNLTAI* 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5411783 5416068 + Chy7G134340.1 Chy07g00604 230615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00604 501 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 32 449 - -
Chy07g00604 501 SUPERFAMILY BRCT domain 42 122 IPR036420 -
Chy07g00604 501 ProSiteProfiles BRCT domain profile. 39 131 IPR001357 -
Chy07g00604 501 SUPERFAMILY BRCT domain 293 412 IPR036420 -
Chy07g00604 501 MobiDBLite consensus disorder prediction 199 213 - -
Chy07g00604 501 ProSiteProfiles BRCT domain profile. 328 411 IPR001357 -
Chy07g00604 501 MobiDBLite consensus disorder prediction 193 213 - -
Chy07g00604 501 Gene3D BRCT domain 23 126 IPR036420 -
Chy07g00604 501 CDD BRCT_TopBP1_rpt2_like 326 401 - -
Chy07g00604 501 SUPERFAMILY BRCT domain 233 317 IPR036420 -
Chy07g00604 501 Gene3D BRCT domain 226 321 IPR036420 -
Chy07g00604 501 Pfam twin BRCT domain 332 393 IPR001357 -
Chy07g00604 501 SMART BRCT_7 41 121 IPR001357 -
Chy07g00604 501 SMART BRCT_7 231 305 IPR001357 -
Chy07g00604 501 SMART BRCT_7 325 401 IPR001357 -
Chy07g00604 501 Gene3D BRCT domain 328 420 IPR036420 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00604 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1 - csv:101210305 916.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02044 Chy-Chr1:25268829 Chy07g00604 Chy-Chr7:5411783 7.51E-07 dispersed
Chy06g01389 Chy-Chr6:14393691 Chy07g00604 Chy-Chr7:5411783 4.52E-07 dispersed
Chy07g00604 Chy-Chr7:5411783 Chy07g00878 Chy-Chr7:12059686 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00604 Chy_Chr07 FPKM 3.930444 5.138108 4.921475 5.112684 9.452355 7.886724 9.905903 0.979049 1.164981 1.010258