Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00627 ATGTCGCAAACGAAGTTGTTCGACGCTGCGGCCGCCACGGACTTGGTGAAGGAACTCACAGCTATTTTTAACTCCGGCAACACTCGGAGCTATGAGTGGAGAGTATCACAGCTTGAGAGCCTCTTGAAGCTCTGCGTTGACCATGAGGAAGATATTTGCGATGCCCTTCGCTCTGACCTCTCCAAGCCTGCCTTGGAATCCATTATTCATGAGATAGGTATGGTAAAAGGTTCGTGTAAATTGGCAATTAAAGAAATCGGAAATTGGATGAAACCAGAGAAGGTTCAAACTACAATGACCAGTTTTCCTTCGTCTGCTGCAATTGTATCAGAACCTTTGGGTGTTGTGCTGATCATTTCTCCTTGGAATTATCCATTCTTTTTATCTCTTGATCCAGTTATTGGAGCAATAGCAGCTGGTAATACCGTGGTTCTAAAGCCTTCAGAAATTTCTCCAGCAACATCATCTTTAATTGCAAAACTTTTTGAGAAGTATTTGGATACGTCTGCTGTAAAAGTTGTCGAGGGTGCTATTCCCGAAACTAATGCTTTGCTGGAGCAAAAGTGGGACAAGATATTTTACACAGGCAACGGTAGAGTGGGGCGTATAGTGATGGCAGCTGCTGCCAAGCACCTTACTCCAGTTATTTTAGAGCTCGGAGGAAAAACTCCAGTAGTAGTTGATTCAAAAATCAATTTACAAGTTGCCTGTAGACGGATTATATCCGGGAAGTGGGGTGGTAACAATGGACAAGCATGCGTTGCTCCTGATTACATCATAACTACGAAAGAATTTGCTCCAAAATTGGCAAGTTCCTTTTTTACTCAAATAAGTTTGGTGGAGTCTTTGAAACAAGAACTGGAGAGATTTTATGGAACGAATCCATTGGAATCTAAAGATATATCTCGCATTGTGAATGCTAACCACTTTAATCGCGTGTCCAAGCTCTTAGATGATGATGAAGTTTCTAGCAAGATTGTTCATGGAGGCGAAAAGGACAAATCTAAATTACAGATTGTTCCCACCATCTTATTGGATGTCCCTCGAGACTCTTTGATCATGACGGAAGAGATTTTTGGTCCCTTGCTTCCCATTATCACGGTAGACAAATTGGAGGATAGCTTCGAAATAGTGAATTCAGGCACAAAGCCGCTAGCAGCATATTTATTTTCCAACAACAAAAAGCTCAAGGAACAGTTCGTGGCTTGTATCTCTGCAGGAGGTGTGGTTATCAACGACACCACCATACATCTAGCAGTTAGCACACTACCATTTGGAGGAGTTGGGGAGAGTGGAATGGGAGCTTACCATGGGAAGTTTTCATTTGATGCATTTAGCCATAAGAAGGCTGTTCTTTATCGAAGTTTCGTGGGTGACGTGCCAATGCGATACCCGCCTTACACTGACGGAAAGCTAAGATTTCTTAAAGCTCTTCTTGGAGGTGGCATCTTGGAACTCATTCGTGCTATTCTTGGTTGGTCGTAA 1485 42.76 MSQTKLFDAAAATDLVKELTAIFNSGNTRSYEWRVSQLESLLKLCVDHEEDICDALRSDLSKPALESIIHEIGMVKGSCKLAIKEIGNWMKPEKVQTTMTSFPSSAAIVSEPLGVVLIISPWNYPFFLSLDPVIGAIAAGNTVVLKPSEISPATSSLIAKLFEKYLDTSAVKVVEGAIPETNALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVILELGGKTPVVVDSKINLQVACRRIISGKWGGNNGQACVAPDYIITTKEFAPKLASSFFTQISLVESLKQELERFYGTNPLESKDISRIVNANHFNRVSKLLDDDEVSSKIVHGGEKDKSKLQIVPTILLDVPRDSLIMTEEIFGPLLPIITVDKLEDSFEIVNSGTKPLAAYLFSNNKKLKEQFVACISAGGVVINDTTIHLAVSTLPFGGVGESGMGAYHGKFSFDAFSHKKAVLYRSFVGDVPMRYPPYTDGKLRFLKALLGGGILELIRAILGWS* 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 5890094 5895304 - Chy7G134570.1 Chy07g00627 230638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00627 494 PANTHER ALDEHYDE DEHYDROGENASE 3 494 - -
Chy07g00627 494 PANTHER ALDEHYDE DEHYDROGENASE 3 494 IPR012394 GO:0006081
Chy07g00627 494 SUPERFAMILY ALDH-like 15 467 IPR016161 GO:0016491
Chy07g00627 494 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 431 IPR016163 GO:0016620
Chy07g00627 494 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 449 IPR016162 GO:0016491
Chy07g00627 494 Pfam Aldehyde dehydrogenase family 9 451 IPR015590 GO:0016491
Chy07g00627 494 PIRSF ALDH 1 486 IPR012394 GO:0006081
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00627 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101219569 940.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00627 Chy-Chr7:5890094 Chy07g01274 Chy-Chr7:17461066 1.51E-162 dispersed
Chy07g00627 Chy-Chr7:5890094 Chy07g00628 Chy-Chr7:5897501 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g01912 . 11 508 Aldehyde Dehydrogenase Gene Family AT3G24503 71.4 1.7e-211 732.3
Chy02g02570 . 64 549 Aldehyde Dehydrogenase Gene Family AT3G24503 54.6 6.5e-155 544.3
Chy02g02570 . 4 549 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 2.7e-255 877.9
Chy02g01912 . 23 508 Aldehyde Dehydrogenase Gene Family AT3G48000 55.6 3.8e-161 565.1
Chy02g02570 . 4 392 Aldehyde Dehydrogenase Gene Family AT1G23800 74.1 4.6e-167 584.3
Chy02g01912 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 6.8e-102 367.9
Chy07g00628 . 13 490 Aldehyde Dehydrogenase Gene Family AT4G34240 63.6 2.8e-180 628.6
Chy07g00627 . 3 494 Aldehyde Dehydrogenase Gene Family AT4G34240 61.6 6.7e-174 607.4
Chy07g00628 . 78 488 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 1.1e-179 626.3
Chy07g00627 . 72 492 Aldehyde Dehydrogenase Gene Family AT1G44170 68.6 3.2e-171 598.2
Chy05g00127 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.9 1.4e-118 423.3
Chy07g01274 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 3.6e-114 408.7
Chy07g01274 . 1 478 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 1.4e-183 639.4
Chy05g00127 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.6 1.4e-159 559.7
Chy11g01046 . 37 529 Aldehyde Dehydrogenase Gene Family AT1G79440 77.1 7.9e-228 786.6
Chy01g00197 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 81.7 5.2e-236 813.9
Chy02g00769 . 193 699 Aldehyde Dehydrogenase Gene Family AT2G14170 60.7 1.4e-177 619.8
Chy02g02550 . 71 571 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 2.4e-250 861.3
Chy02g02550 . 71 574 Aldehyde Dehydrogenase Gene Family AT3G48170 80.4 3.4e-252 867.5
Chy05g01239 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.9 2.6e-268 921.0
Chy12g01328 . 21 556 Aldehyde Dehydrogenase Gene Family AT5G62530 77.8 5.4e-259 890.2
Chy11g01565 . 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 74.3 1.9e-270 928.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00627 Chy_Chr07 FPKM 26.042774 29.506411 22.724497 24.690607 37.226898 30.447948 35.032532 16.30575 15.467277 15.48977