Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00658 ATGGATTCTTACCAATCTGGGGGCCCTTCACCACACGGCAATCGATTCTCTTGGATTTCCATAGGCGTTCCTTCTTGGTCTAAACCTTCGTCCTACTCTCTACTCTCCTCTCTCCGGCGCGCTTCTTTGCTCTCAATTCCATCTCTCTGCTTCAGTATGGCGAAGGAGGTTTATACCAGGGAACACTTACTTGCCCTCTTGCAGGATCTTCAAGTTGATTTTTCCAGATACGAACATCCTGCTGTATTGACAGTTGAAGCTCAGGCAAAATATGTTGGAAATTTGGGGGGTGGACTCAGTAAGAATCTGTTTTTGAAGGACAAAAAGAATAGATACTATATTGTTTCTGCATTGGCAGACACCAAAGTGGATCTAAAAGTTCTATCTGTGAGACTTGGTTTGGGTAAAGGTGGTCTGAGAATGGCTCCCGAGGAAGCATTGGGTGAGAAACTTAAGGTGTCCCTGGGCTGTGTTACTCCATTTGCACTCATCAATAAAACAGCACGGGATGTCGCCTTGTTGTTAGACCAGGGATTTAAAGGCCAGGAGTTTTGCTTCTTTCATCCTCTGTCAAACGAAACATCAATATCCATTAATACGAGTAATCTCGACAAGTTCCTTCAATCGATTGGGAGAGACCCTTCATATGTTGACTTGGAGGCTAATCCTTCTGTAGGAAAGGATCAACCCCCCGATCTTGCCGGACTTGTTCCCTCTGTTTCTTCCCTTGTGCCTGATACTCCAGAGAAAGTATCTTCTCGCCCGGATTCTAATGAAAATCACGGTGTTACTGACAAGAAGTCTAAAGCAGTTGCAGCGAACACAGTCAAACCATCTACCACTGTGAAAGTTGGAAAGGACAAACCTACACCCAAGGTTCAACCAACCTATGCAAATGTGGAAAAATTTGTGGAAGAGATCCTTGATAAGACGTCAGCAATAGTGCTCTCAGAGCTGACAGAGGAGACAGTTAATAAACATGGAGAGCATTTGGGAGCCGCGGTGTCAAACAGCATTAAGAGACATCTCAGCTCGGAATTGAACAATCTTTCTATGATATTTAAGAACACTGCATACACAGAAGGGTTCCATGCTGGGTCTTCCCATAAAGTGAAACATCCATGCTGA 1128 44.41 MDSYQSGGPSPHGNRFSWISIGVPSWSKPSSYSLLSSLRRASLLSIPSLCFSMAKEVYTREHLLALLQDLQVDFSRYEHPAVLTVEAQAKYVGNLGGGLSKNLFLKDKKNRYYIVSALADTKVDLKVLSVRLGLGKGGLRMAPEEALGEKLKVSLGCVTPFALINKTARDVALLLDQGFKGQEFCFFHPLSNETSISINTSNLDKFLQSIGRDPSYVDLEANPSVGKDQPPDLAGLVPSVSSLVPDTPEKVSSRPDSNENHGVTDKKSKAVAANTVKPSTTVKVGKDKPTPKVQPTYANVEKFVEEILDKTSAIVLSELTEETVNKHGEHLGAAVSNSIKRHLSSELNNLSMIFKNTAYTEGFHAGSSHKVKHPC* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6321680 6325278 + Chy7G134880.1 Chy07g00658 230669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00658 375 SUPERFAMILY YbaK/ProRS associated domain 59 219 IPR036754 GO:0002161
Chy07g00658 375 Gene3D - 52 226 IPR036754 GO:0002161
Chy07g00658 375 PANTHER PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED 58 372 - -
Chy07g00658 375 Pfam Aminoacyl-tRNA editing domain 79 206 IPR007214 GO:0002161
Chy07g00658 375 MobiDBLite consensus disorder prediction 252 266 - -
Chy07g00658 375 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 58 372 IPR040285 -
Chy07g00658 375 MobiDBLite consensus disorder prediction 220 268 - -
Chy07g00658 375 CDD PrdX_deacylase 60 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00658 - - K08176 csv:101217512 627.861
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g290 . . . . Bpe02g00075 . . Bma01g02643 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1391 Cone7ag1545 . . Lsi04g02381 Csa04g01811 . . . . Bda11g00743 . . . . . . . . . . . . . . Bhi09g02662 . . . Hepe01g2274 Mch11g0821 . . . . . . . . . . Chy07g00658 Cme07g00865
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006927 1 1 1 1 1 0 2 1 0 1 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00658 Chy_Chr07 FPKM 47.927639 51.725124 40.910809 42.981354 42.592323 40.395302 41.337936 72.852577 72.702675 80.830971