Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00682 ATGGCTACCTCAATCAACAATCCCCAATTCTCTCATTTGGATTCTTTCTCTAACCTCCGCTCCGACTCATCACTTCGTCGTTGCAATTTCCCTTCCATTCCCACCAATCATCTCCAAATCAACAACCACGACGACAATGAAGATTTCTCTAGTGACGATGACAACGACAACGACTCTGATTTTACCCATTTGATTCGTGAAGGGATTCAAGAATTGGAACCCTCCATTTTGGACCCCAGAGATTTCGGAACGGCTGATTGTTGGATCCACCGAAATGAATCCATGGTTCGTCTTACCGGTAAACATCCCTTCAATTCTGAGCCGCCGTTATCTCGTTTGATGCACCATGGGTTCATCACTCCCGTGCCTCTCCATTACGTTCGTAACCACGGTCCGGTACCCAAGGCTAAGTGGGAGGATTGGACCGTTGAGGTTTGCGGTTTAGTCAAAAAACCAACCCGGTTCACTATGGATCAACTCGTAAACGATTTCAGCAGCCGTGAGTTTCCTGTCACACTCGTCTGCGCCGGAAACCGCCGTAAGGAGCACAATATGGTTAAAAAAACCATTGGCTTTAACTGGGGTGCAGGCGGGACTTCCACCTCGGTCTGGCGAGGGGTCCCACTACGAGACGTTCTGAAATGGTGTGGTATCTTCAGCAGTAAAAAAGGAGCACTCAATGTTTGCTTTGAAGGAGCTGAATGTCTGCCCGGCGGCGGTGGGTCCAAGTACGGTACTAGTATCAGAAAGGAAATAGCCATGGACCCAGCTAGAGATATAATTTTAGCCTATATGCAAAACGGCGACGCACTGTCACCGGACCATGGTTTTCCGGTGCGGGTTATCACCCCCGGTTTCATCGGTGGAAGGATGGTGAAATGGGTAAAACGCATTATCGTAACAACACAAGAATCCGATAGCTATTACCATTATAGAGACAACAAAGTCCTCCCTTCCCATGTCGATGAAGAATTAGCAAACGCAGAAGCTTGGTGGTATAAGCCGGAGTGTATTATTAGTGAGTTGAACATAAACTCGGTGATAACGACCCCATGTCACGAGGAAATCTTGCCGATAAATTCATGGACGACACAACGGCCGTACACGTTGAGGGGATATGCATATTCTGGAGGAGGAAAGAAAGTGACACGGGTGGAGGTGACTTTAGATGGTGGTGAGTCGTGGCATCTTTGCGATTTGAACTGTCCTGAGAAAGCTACAAAATACGGCAAATATTGGTGTTGGTGTTTTTGGTCACTGGAAGTTGAAGTTCTTGATTTACTTGCTGCTAAAGAAATGGCAGTACGCGCTTGGGATGAAACTTTCAACACTCAACCTGAAAAGCTCATTTGGAATCTCATGGGAATGATGAACAATTGTTGGTTTCGAGTGAAAACCAACATGTGTAAACCGCATAAAGGAGAAATCGGAATCGTTTTTGAACACCCAACTGCACTCGGCAACCAATCCGGCGGATGGATGGCTAAAGAAAGACATCTCGAAATATCCACCGAACCAAATCAAACCATGAAGAAGAGTATTTCGTCTCCCTTCATCAACACAACCTCAAAAACTTACTCCATCTCTGACGTTCAAAAGCACAACTCAGACCAATCCGCCTGGATCGTCGTTCACGGCCATGTTTACGACAGCACCCGTTTCCTCAAAGACCACCCCGGGGGTACGAACAGCATTCTCATCAATGCCGGTACCGATTGTACGGAGGAATTCGACGCCATTCACTCGGACAAAGCCAAAAAAATGCTAGAGGAATACAGAATCGGCGAGTTGATCACCACCGGCTACATATCGGATTCATCACCTAACAACTCCATCCATGGGGATTCTTCTAGTTCTAATCCTCACTTAGCTCCAATAACAGAAACAAGGCGCGTGGCTTTAATCCCGCGTGAAAAAATTCGCTGCAAATTAGTTTCCAAAACGTCAATCTCACACGACGTCAGATGGTTCAGATTCGCCTTACCTTTAGAGGATCAAATCCTGGGATTACCTGTAGGGAAACACATATTCCTATGTGCAAACATAGACGGTAAGCTCTGTATGAGGGCCTACACACCAACCACTTGCATCAATCAAGTCGGCTATTTCGACTTAGTGGTCAAAATCTATTTCAAAAACGTGAACCCAAAATTCCCAAACGGCGGACTCATGTCTCAGCATTTGGAGTCTCTCCCACTTGGTTCCGAACTAGAAATCAAAGGTCCGTTAGGCCACATCGAATACACCGGAAACGGAAAGTTCGTAGTGGACGGTAGAGTAAAGAAGGCAAAGAAGCTAGCAATGTTGGCAGGCGGAACGGGAATAACGCCGATATATCAAGTGGCGCAGGCGGTTCTGAAGGATCCTGAGGATGAAACAGAGATGTTTTTGGTGTATGCGAACAGAACAGAAAATGATATTCTGTTAAAGGATGAGTTGGATGAATGGAGTAAAAGGGATAAGAGGTTTAAAGTGTGGTACGTTGTGAATGAGAGTGTAAGGGAAGGGTGGGAATATAGTGTGGGAGTGGTGAGGGAGAGTCTTATGAGGGAGCATCTTCCAGAAGCTTCGCCGGAAACAATGGCGTTGGCTTGTGGACCACCGCCAATGATTAAGTTTGCTGTGAAACCCAATTTGGAGAAGATGAATTACGACACTACTAACTCGTTGTTGGTGTTTTAG 2682 46.23 MATSINNPQFSHLDSFSNLRSDSSLRRCNFPSIPTNHLQINNHDDNEDFSSDDDNDNDSDFTHLIREGIQELEPSILDPRDFGTADCWIHRNESMVRLTGKHPFNSEPPLSRLMHHGFITPVPLHYVRNHGPVPKAKWEDWTVEVCGLVKKPTRFTMDQLVNDFSSREFPVTLVCAGNRRKEHNMVKKTIGFNWGAGGTSTSVWRGVPLRDVLKWCGIFSSKKGALNVCFEGAECLPGGGGSKYGTSIRKEIAMDPARDIILAYMQNGDALSPDHGFPVRVITPGFIGGRMVKWVKRIIVTTQESDSYYHYRDNKVLPSHVDEELANAEAWWYKPECIISELNINSVITTPCHEEILPINSWTTQRPYTLRGYAYSGGGKKVTRVEVTLDGGESWHLCDLNCPEKATKYGKYWCWCFWSLEVEVLDLLAAKEMAVRAWDETFNTQPEKLIWNLMGMMNNCWFRVKTNMCKPHKGEIGIVFEHPTALGNQSGGWMAKERHLEISTEPNQTMKKSISSPFINTTSKTYSISDVQKHNSDQSAWIVVHGHVYDSTRFLKDHPGGTNSILINAGTDCTEEFDAIHSDKAKKMLEEYRIGELITTGYISDSSPNNSIHGDSSSSNPHLAPITETRRVALIPREKIRCKLVSKTSISHDVRWFRFALPLEDQILGLPVGKHIFLCANIDGKLCMRAYTPTTCINQVGYFDLVVKIYFKNVNPKFPNGGLMSQHLESLPLGSELEIKGPLGHIEYTGNGKFVVDGRVKKAKKLAMLAGGTGITPIYQVAQAVLKDPEDETEMFLVYANRTENDILLKDELDEWSKRDKRFKVWYVVNESVREGWEYSVGVVRESLMREHLPEASPETMALACGPPPMIKFAVKPNLEKMNYDTTNSLLVF* 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 6605252 6608141 - Chy7G135120.1 Chy07g00682 230693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00682 893 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 767 786 IPR001709 GO:0016491
Chy07g00682 893 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 861 869 IPR001709 GO:0016491
Chy07g00682 893 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 793 802 IPR001709 GO:0016491
Chy07g00682 893 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 805 816 IPR001709 GO:0016491
Chy07g00682 893 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 557 567 IPR001709 GO:0016491
Chy07g00682 893 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 689 696 IPR001709 GO:0016491
Chy07g00682 893 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 837 853 IPR001709 GO:0016491
Chy07g00682 893 SUPERFAMILY Riboflavin synthase domain-like 629 751 IPR017938 -
Chy07g00682 893 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 147 182 IPR022407 GO:0043546
Chy07g00682 893 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 554 561 IPR018506 GO:0020037
Chy07g00682 893 Gene3D - 83 331 IPR036374 -
Chy07g00682 893 Pfam Oxidoreductase NAD-binding domain 768 875 IPR001433 GO:0016491
Chy07g00682 893 PIRSF Nitr_rd_NADH 12 892 IPR012137 GO:0006809|GO:0042128|GO:0050464
Chy07g00682 893 Pfam Oxidoreductase FAD-binding domain 642 748 IPR008333 -
Chy07g00682 893 Pfam Cytochrome b5-like Heme/Steroid binding domain 529 597 IPR001199 -
Chy07g00682 893 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 523 598 IPR001199 -
Chy07g00682 893 PRINTS Cytochrome B5 reductase signature 689 696 - -
Chy07g00682 893 PRINTS Cytochrome B5 reductase signature 805 816 - -
Chy07g00682 893 PRINTS Cytochrome B5 reductase signature 668 679 - -
Chy07g00682 893 PRINTS Cytochrome B5 reductase signature 861 869 - -
Chy07g00682 893 PRINTS Cytochrome B5 reductase signature 767 786 - -
Chy07g00682 893 PRINTS Cytochrome B5 reductase signature 734 748 - -
Chy07g00682 893 PANTHER NITRATE REDUCTASE 56 893 - -
Chy07g00682 893 Gene3D - 341 516 - -
Chy07g00682 893 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 521 602 IPR036400 -
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 182 194 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 384 396 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 449 462 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 411 421 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 171 182 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 96 110 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 339 351 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 255 271 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 288 301 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 272 285 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 118 134 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 370 384 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 197 212 IPR008335 GO:0016491
Chy07g00682 893 PRINTS Eukaryotic molybdopterin domain signature 436 448 IPR008335 GO:0016491
Chy07g00682 893 CDD cyt_b5_reduct_like 642 885 - -
Chy07g00682 893 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 736 887 IPR039261 -
Chy07g00682 893 MobiDBLite consensus disorder prediction 34 61 - -
Chy07g00682 893 CDD eukary_NR_Moco 81 466 - -
Chy07g00682 893 Pfam Mo-co oxidoreductase dimerisation domain 338 467 IPR005066 GO:0016491|GO:0030151
Chy07g00682 893 SMART Cyt_b5_2 526 598 IPR001199 -
Chy07g00682 893 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 637 749 IPR017927 GO:0016491
Chy07g00682 893 Pfam Oxidoreductase molybdopterin binding domain 130 309 IPR000572 -
Chy07g00682 893 Gene3D Translation factors 630 743 - -
Chy07g00682 893 SUPERFAMILY E set domains 341 466 IPR014756 -
Chy07g00682 893 Gene3D - 744 893 IPR039261 -
Chy07g00682 893 PRINTS Cytochrome B5 signature 548 558 IPR001199 -
Chy07g00682 893 PRINTS Cytochrome B5 signature 558 572 IPR001199 -
Chy07g00682 893 PRINTS Cytochrome B5 signature 573 580 IPR001199 -
Chy07g00682 893 PRINTS Cytochrome B5 signature 585 597 IPR001199 -
Chy07g00682 893 Gene3D - 519 599 IPR036400 -
Chy07g00682 893 PANTHER NADH-CYTOCHROME B5 REDUCTASE 56 893 IPR001834 GO:0016491
Chy07g00682 893 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 78 339 IPR036374 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00682 K10534 NR; nitrate reductase (NAD(P)H) [EC:1.7.1.1 1.7.1.2 1.7.1.3] - csv:101216001 1738.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00682 Chy-Chr7:6605252 Chy09g00574 Chy-Chr9:6394712 0 dispersed
Chy03g00110 Chy-Chr3:1054125 Chy07g00682 Chy-Chr7:6605252 4.33E-55 transposed
Chy04g01700 Chy-Chr4:23423112 Chy07g00682 Chy-Chr7:6605252 2.17E-54 transposed
Chy05g00027 Chy-Chr5:194281 Chy07g00682 Chy-Chr7:6605252 5.31E-50 transposed
Chy08g00202 Chy-Chr8:4773222 Chy07g00682 Chy-Chr7:6605252 1.19E-48 transposed
Chy12g00793 Chy-Chr12:12511528 Chy07g00682 Chy-Chr7:6605252 2.03E-54 transposed
Chy07g00682 Chy-Chr7:6605252 Chy09g00573 Chy-Chr9:6376130 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g325 . . . . . . . . Cmo04g02441 Cmo15g00727 . Cma09g00664 . . . Cpe06g00519 . . . . . . . . . . . . . . . . . . Cone20ag0466 Lsi04g02366 Csa04g01830 . . Blo17g00195 Blo18g00197 . Bda13g01500 Bpe02g01621 Bpe14g00366 Bma01g00839 Bma02g00239 Sed04g0506 . Cmo09g00648 . . Car04g02252 Car09g00590 Cpe01g02024 . Bhi09g02640 Tan01g3984 Cmetu09g0993 . Hepe01g2257 Mch11g0805 . Cla11g01515 Cam11g1575 Cec11g1604 Cco11g1602 Clacu11g1730 Cmu11g1548 Cre11g1965 . . Chy07g00682 Cme07g00892
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000829 1 3 2 3 2 2 4 3 3 3 3 3 4 2 3 6 3 1 4 3 5 4 3 3 3 4 3 3 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00682 Chy_Chr07 FPKM 16.920683 22.364614 44.715492 42.93824 4.526581 6.785816 6.282326 2.123339 2.472064 1.857924