Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00740 ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGGTTCAGCAAGCTCATCCGCGACGCCATGGCTTAGGTTGAAGGATCCAAGGATTGTGCGCGTGTCGCGAGCTTTCGGAGGCAAAGATCGACACAGCAAAGTTTGTACCATAAGAGGACTGCGCGACAGGCGTGTAAGACTATCAGTTTCCACCGCAATTCAACTCTATGATCTTCAAGACAGGCTGGGGCTTAACCAGCCGAGCAAGGTTGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCTTTACCAATCCCGTCCGCAAGCCTCGGCCTTCACTACCAATCAATGGTACCAACAACAACAACAGTCGTACACCCCCATAGATCGGAGTTCAAAATCATTGACAAGGCCGGGGTCGAGGACGAGACAGAACAAAAACAACACAAATCCAATAGTAATCCTTCTCACCCTAATTCTTCTTTCTCAGCCCTTTTGAATAATGTTTCTGCCCCTCCATTTGGTTTTTATTGGGATCATAATCCTCCATCATCATCATCATCATCATCAACAAACAATAATCTTCCATTTCTTACATCTCAAGCTGGGGATAATAATAACAACAATAACCTTCATACCTTCAATCATCTCAATTTGTCTTTGCCTCCTTCCCCTTTGTCTCTCTCAACTGCCTCTCAGTTTTTGGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAACAACAACAACAACAATAATCCTTCTTTCCACCCAAATGTTAGGCCTTTTCACTTTAGTATGGCTACTAAATTCCTTCCCCATCAAGACAAGAATAATAACAATGTAGATCCTACAAGTAAGGATCATGGATTTGCGTCTCATCAATGA 930 43.01 MPADKHDERHNMIKNSKEENSPPPKLAAGSASSSATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMVPTTTTVVHPHRSEFKIIDKAGVEDETEQKQHKSNSNPSHPNSSFSALLNNVSAPPFGFYWDHNPPSSSSSSSTNNNLPFLTSQAGDNNNNNNLHTFNHLNLSLPPSPLSLSTASQFLEFNHLHQNFFINNNNNNNNPSFHPNVRPFHFSMATKFLPHQDKNNNNVDPTSKDHGFASHQ* 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7726894 7728415 - Chy7G135700.1 Chy07g00740 230751

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00740 309 Pfam TCP family transcription factor 55 167 IPR017887 -
Chy07g00740 309 MobiDBLite consensus disorder prediction 287 309 - -
Chy07g00740 309 MobiDBLite consensus disorder prediction 1 35 - -
Chy07g00740 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 292 IPR005333 GO:0003700
Chy07g00740 309 MobiDBLite consensus disorder prediction 149 163 - -
Chy07g00740 309 PANTHER OS05G0513100 PROTEIN 21 292 - -
Chy07g00740 309 MobiDBLite consensus disorder prediction 1 16 - -
Chy07g00740 309 MobiDBLite consensus disorder prediction 149 177 - -
Chy07g00740 309 MobiDBLite consensus disorder prediction 196 222 - -
Chy07g00740 309 ProSiteProfiles TCP domain profile. 55 113 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00740 - - - csv:101216548 528.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02437 Chy-Chr2:28028803 Chy07g00740 Chy-Chr7:7726894 1.56E-40 dispersed
Chy07g00740 Chy-Chr7:7726894 Chy07g00959 Chy-Chr7:14208925 7.24E-25 dispersed
Chy02g00132 Chy-Chr2:940275 Chy07g00740 Chy-Chr7:7726894 7.39E-31 transposed
Chy12g01493 Chy-Chr12:18794826 Chy07g00740 Chy-Chr7:7726894 2.02E-34 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy10g00651 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Chy11g02002 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 3.1e-66 249.2
Chy10g00992 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Chy12g01554 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Chy10g00749 . 47 166 TCP Transcription Factor Family AT3G47620 65.1 2.7e-36 150.2
Chy10g00749 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Chy06g01548 . 42 295 TCP Transcription Factor Family AT3G27010 54.3 2.1e-58 223.0
Chy10g00651 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Chy02g02437 CCT 40 139 TCP Transcription Factor Family AT5G60970 76.2 1.9e-39 160.2
Chy07g00740 . 30 172 TCP Transcription Factor Family AT3G02150 57.0 1.3e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18303 PF03634 TCP 5.60E-28 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00740 Chy_Chr07 FPKM 4.963089 6.001407 4.768217 3.957838 7.847316 4.199841 6.906112 3.800894 4.36878 5.663499