Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00750 ATGGCTCTACCCATTTCCAGATTACACCCTCTCTTTCCCCTTCTCGCCCTTTTTCTTGCCTTCTCTTCCTTTCTTGCTTCAACAGAAGCGTATGATCCACTTGATCCAAATGGAAACATAACTATCAAATGGGATATTATGAGCTGGACTGCTGATGGATATGTTGCTGTAGTTACTCTGTATAATTTCCAACAATATCGTCATATTCAAACACCGGGATGGTCTCTTCAATGGAAATGGGCAAAGAAAGAGGTCATATGGAACATGCTGGGAGGCCAAGCAACTGAGCAAGGTGATTGTTCTAGATTTAAGGGGAACATCCCCCATTGCTGCAAGAAGGATCCAACGGCTGTTGATCTATTGCCCGGAACTCCTTATAACCAACAGATTGCAAATTGCTGTAAAGGCGGAGTTCTTAACTCCTGGGTGCAAGATCCAGCTACTGCAGTAAGCTCATTTCAGCTCACCGTTGGTTCAGCCGGAACCTCAAATAAAACCGTTCGACTGCCAAAGAACTTCACTTTAAAAGCACCTGGACCTGGTTATACCTGTGGACCAGCCAAAATTGTTAAACCGAGCAAATTCAAATCCCCAGACAAACGGAGAGTTACACAGGCCTTGATGACATGGAATGTTACATGCACATATTCACAATTTCTGGCCCAAAAGACTCCTACTTGCTGTGTTTCGCTGTCATCATTTTACAACGACACAATTGTTTCTTGCCCGAAATGCTCCTGTGGCTGTCAAAGCAACTTGAACGCACCCCAAAATTGTGTGGAGCCAAATTCTCCATATTTAGCTTCTGTTGTTAACAGTGCTAGTTCTAGCAAGAACAATTTGACACCTTTGGTTCAGTGTACTGGCCACATGTGCCCGATTCGAGTTCACTGGCACGTGAAGATTAATTATAAGGAGTATTGGCGTGTGAAGATCACAATTACAAACTTCAATTACGTGATGAACTATACAAATTGGAACTTAGTTGTCCAACATCCCAACTTCGACAATCTGACACAGATTTTCAGCTTCAACTACCAGTCAATCAATCCATATGGAACAATAAATGATACTGCAATCCTGTGGGGAGTCAAGTTCTACAATGATTTGCTCATGCAAGCAGGTCCTCTTGGTAATGTACAGACAGAGCTTCTTTTCCGGAAGGATCAATCGGATTTCACATTTGATAAAGGTTGGGCTTTCCCTCGGAGGATCTATTTTAATGGGGACAATTGTGTTATGCCACCTCCAGAAGCCTACCCCTACTTACCGAACAAGGGTTCTAAGCAAGGTGTCTCAGTGTTTACTATGCTTTTGCTGATTTCCTTGACTCTCTTGTCCTTTCACCATTCGTTTGCATAA 1362 42.95 MALPISRLHPLFPLLALFLAFSSFLASTEAYDPLDPNGNITIKWDIMSWTADGYVAVVTLYNFQQYRHIQTPGWSLQWKWAKKEVIWNMLGGQATEQGDCSRFKGNIPHCCKKDPTAVDLLPGTPYNQQIANCCKGGVLNSWVQDPATAVSSFQLTVGSAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPSKFKSPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPKCSCGCQSNLNAPQNCVEPNSPYLASVVNSASSSKNNLTPLVQCTGHMCPIRVHWHVKINYKEYWRVKITITNFNYVMNYTNWNLVVQHPNFDNLTQIFSFNYQSINPYGTINDTAILWGVKFYNDLLMQAGPLGNVQTELLFRKDQSDFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNKGSKQGVSVFTMLLLISLTLLSFHHSFA* 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8105336 8108152 + Chy7G135800.1 Chy07g00750 230761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00750 453 PIRSF COBRA 5 453 IPR006918 GO:0010215|GO:0031225
Chy07g00750 453 PANTHER COBRA-LIKE PROTEIN 10 451 - -
Chy07g00750 453 Pfam COBRA-like protein 54 217 IPR006918 GO:0010215|GO:0031225
Chy07g00750 453 PANTHER PROTEIN COBRA 10 451 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00750 - - - csv:101207224 886.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02401 Chy-Chr2:27765988 Chy07g00750 Chy-Chr7:8105336 0 dispersed
Chy02g02402 Chy-Chr2:27769415 Chy07g00750 Chy-Chr7:8105336 0 dispersed
Chy06g01144 Chy-Chr6:10026780 Chy07g00750 Chy-Chr7:8105336 1.15E-163 dispersed
Chy07g00750 Chy-Chr7:8105336 Chy07g00751 Chy-Chr7:8109623 2.39E-102 tandem
Chy12g01483 Chy-Chr12:18727904 Chy07g00750 Chy-Chr7:8105336 1.08E-69 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g02401 CCT,ECH 48 447 COBRA Gene Family AT5G60920 80.5 9.8e-210 726.1
Chy07g00750 . 42 448 COBRA Gene Family AT5G60920 74.2 4.7e-196 680.6
Chy02g02402 . 55 471 COBRA Gene Family AT5G60920 64.2 1.2e-170 596.3
Chy06g01144 . 50 444 COBRA Gene Family AT5G60920 53.9 5.3e-131 464.5
Chy07g00751 . 123 288 COBRA Gene Family AT5G60920 76.5 1.9e-80 296.6
Chy12g01483 CCT,ECH 27 194 COBRA Gene Family AT5G60920 61.3 7.1e-59 224.9
Chy02g02401 CCT,ECH 23 451 COBRA Gene Family AT3G02210 73.9 8.1e-205 709.9
Chy07g00750 . 12 451 COBRA Gene Family AT3G02210 73.0 5.4e-201 697.2
Chy02g02402 . 27 472 COBRA Gene Family AT3G02210 61.6 1.7e-170 595.9
Chy06g01144 . 20 439 COBRA Gene Family AT3G02210 55.0 2.4e-140 495.7
Chy07g00751 . 97 288 COBRA Gene Family AT3G02210 70.1 5.1e-82 302.0
Chy12g01483 CCT,ECH 41 194 COBRA Gene Family AT3G02210 68.8 9.3e-60 228.0
Chy02g02401 CCT,ECH 21 444 COBRA Gene Family AT3G29810 74.3 2.4e-201 698.4
Chy07g00750 . 27 446 COBRA Gene Family AT3G29810 72.4 4.1e-193 671.0
Chy02g02402 . 38 474 COBRA Gene Family AT3G29810 61.3 1.7e-167 585.9
Chy06g01144 . 32 448 COBRA Gene Family AT3G29810 54.7 6.8e-140 494.2
Chy07g00751 . 106 288 COBRA Gene Family AT3G29810 71.0 1.7e-82 303.5
Chy12g01483 CCT,ECH 41 194 COBRA Gene Family AT3G29810 61.0 1.0e-55 214.5
Chy02g02402 . 32 389 COBRA Gene Family AT5G15630 77.4 1.1e-174 609.4
Chy02g02401 CCT,ECH 31 361 COBRA Gene Family AT5G15630 73.5 3.0e-151 531.6
Chy07g00750 . 27 356 COBRA Gene Family AT5G15630 68.2 1.3e-143 506.1
Chy06g01144 . 38 360 COBRA Gene Family AT5G15630 50.9 2.9e-98 355.5
Chy07g00751 . 101 288 COBRA Gene Family AT5G15630 82.4 7.2e-97 350.9
Chy12g01483 CCT,ECH 27 194 COBRA Gene Family AT5G15630 60.7 5.0e-58 221.9
Chy02g02401 CCT,ECH 30 224 COBRA Gene Family AT5G60950 58.2 2.2e-64 242.3
Chy07g00750 . 23 218 COBRA Gene Family AT5G60950 59.4 2.4e-63 238.8
Chy07g00751 . 100 288 COBRA Gene Family AT5G60950 55.3 2.2e-53 205.7
Chy06g01144 . 31 432 COBRA Gene Family AT1G09790 60.5 3.0e-151 531.9
Chy07g00750 . 23 425 COBRA Gene Family AT1G09790 53.7 9.5e-134 473.8
Chy02g02401 CCT,ECH 32 432 COBRA Gene Family AT1G09790 53.6 4.0e-132 468.4
Chy12g01483 CCT,ECH 43 197 COBRA Gene Family AT1G09790 50.3 8.6e-42 168.3
Chy06g00736 . 35 644 COBRA Gene Family AT4G16120 66.6 1.8e-253 872.1
Chy06g01797 . 56 669 COBRA Gene Family AT4G16120 53.1 3.8e-203 704.9
Chy04g00985 . 49 653 COBRA Gene Family AT4G16120 52.5 2.7e-201 698.7
Chy06g00736 . 28 635 COBRA Gene Family AT3G16860 64.7 4.1e-242 834.3
Chy06g01797 . 60 661 COBRA Gene Family AT3G16860 52.6 2.4e-194 675.6
Chy04g00985 . 47 654 COBRA Gene Family AT3G16860 51.2 4.6e-193 671.4
Chy06g00736 . 17 630 COBRA Gene Family AT5G49270 62.0 3.6e-238 821.2
Chy06g01797 . 60 672 COBRA Gene Family AT5G49270 50.7 1.1e-194 676.8
Chy04g00985 . 53 649 COBRA Gene Family AT5G49270 51.7 1.0e-192 670.2
Chy04g00985 . 10 672 COBRA Gene Family AT3G20580 59.9 3.0e-248 854.7
Chy06g01797 . 56 676 COBRA Gene Family AT3G20580 62.6 3.0e-248 854.7
Chy06g00736 . 6 627 COBRA Gene Family AT3G20580 52.7 5.6e-202 701.0
Chy06g01797 . 60 677 COBRA Gene Family AT4G27110 63.1 4.2e-242 834.3
Chy04g00985 . 5 670 COBRA Gene Family AT4G27110 57.6 5.7e-231 797.3
Chy06g00736 . 6 645 COBRA Gene Family AT4G27110 51.6 9.8e-199 690.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00750 Chy_Chr07 FPKM 2.484536 3.182209 0.10561 0.045899 0.563208 0.537925 1.197676 0.122694 0.062872 0.146069