Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00765 ATGGGAAGAGGGAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGCCGCCAAGTAACTTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCTCATGAGATCTCTGTTCTTTGTGAAGCTGATGTTGCTTTGATTGTTTTCTCCACCAAAGGAAAACTCTTTGAGTACTCTTCTGATTCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTCTTATGCAGAGAGACCGTTGGCCCCAAATGGAGGTTCTGAATTACAGACAAGTTGGTGTCAGGAGTATCCAAAACTTACAGCCAGGTTGGAAATTGTACAGAAAAACTTAAGGCATTGTTTGGGAGAAGATCTTGACCCTTTGAATTTAAGAGAACTTCAAAGCTTAGAGCAACAACTTGACACATCACTCAAGCGCATAAGATCTAGAAAGAACCAACTAATGCAAGAATCTATTTCAATATTGCACAAAAAGGAAAAGGACTTGCAAGAGGAGAACAGGCAACTAGCGAATAAGGTAAAGGAAAATGAGAAGGCTTTGGTTGAACGTGGACAGTGCGATGTTCCAAACTTGGTTCATAATAATCAGCCAATTTTTGAAATGACACCACCAATTCCTTCTTTATCATTTGGAGCGAACTTGAATGGGAGAGGATCAAGAGGATCAGATGAAGATGAAACAAGGCCAACCAGAATCAACAACATCCAAATACCAGCGTGGATGCTTCGCCATGTGACTGAAAATTCTAATAACTAA 756 39.81 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSSDSSMEKILEKYERYSYAERPLAPNGGSELQTSWCQEYPKLTARLEIVQKNLRHCLGEDLDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISILHKKEKDLQEENRQLANKVKENEKALVERGQCDVPNLVHNNQPIFEMTPPIPSLSFGANLNGRGSRGSDEDETRPTRINNIQIPAWMLRHVTENSNN* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8527001 8532708 + Chy7G135950.1 Chy07g00765 230776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00765 251 MobiDBLite consensus disorder prediction 209 230 - -
Chy07g00765 251 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Chy07g00765 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy07g00765 251 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Chy07g00765 251 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Chy07g00765 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy07g00765 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy07g00765 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy07g00765 251 Coils Coil 126 150 - -
Chy07g00765 251 PANTHER BNAA09G02740D PROTEIN 1 198 - -
Chy07g00765 251 Coils Coil 152 182 - -
Chy07g00765 251 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy07g00765 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy07g00765 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy07g00765 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy07g00765 251 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy07g00765 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00765 Chy-Chr7:8527001 Chy12g01480 Chy-Chr12:18701175 3.07E-56 dispersed
Chy02g00031 Chy-Chr2:215272 Chy07g00765 Chy-Chr7:8527001 9.09E-42 transposed
Chy12g01479 Chy-Chr12:18691801 Chy07g00765 Chy-Chr7:8527001 2.07E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18304 PF01486 K-box 2.70E-28 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00765 K09264 - csv:101218674 488.804