Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00809 ATGGGGAGTCCTGGATCTGGTGCGGTTGATTATGCTGTGGGATCGATCGTGTGGGTTCGAAGGAGGAATGGTTCATGGTGGCCTGGTAAAATCTTGGGTTCTGATGAGCTTTCATCTTCGCACCTTACATCACCTCGATCTGGAACTCCGGTCAAGCTCCTTGGAAGAGAAGATGCCAGTGTGGATTGGTACAATTTAGAAAAGTCCAAGCGAGTAAAACCATTTCGATGTGGTGAGTTTGATGATTGTATTGAAAGGGCAGAGTCCTCGCAAGGCATGCCAATAAAGAAGAGAGAGAAATATGCGCGAAGGGAGGATGCTATTCTTCATGCTCTTGAACTTGAGAAGGAACTACTGAATAAGCAAGGAAAACTTAACTTATATTCTGATCAAATGACTATTGAATCCCCTGGTGCCACTGCAAAGGAAGGAATACTTTTTTCAGAACATATAGGAACTGATGATCACAACGATGGACATTCTGAATCACACCAATTTTCTAAGACAATACATGTAAGCTATGACAATGAAATCACGGAACCATGTCTTAAAGCAAATGAAGGAGCACAGCGTAGTGGTGAGGATGACCATTCTGAATCAAGGCCGAGAATGAGAGGCTTGCAGGACTTTGGACTCAGAATTACTTCTTCCAAAAGAAAGTTTCTATCTTCCTCTGTTGTCTCGAATGGTTTTGAAATGCTTGCAACTGATACCAATGCTCTGGCTCCTTCCAATGTTTGTAACATAGGAAATGACTGCGATGCAAATGGGATGCAGCAAATCGATCGGGCGAAGAGGAGCAAGTGTATGTATCTTCCAGCTGATTCTAGTGATTCATTGGAATGCAGAGAATCTTCTCTAGGTCAAGTTGAGATGTCAACACCTGATTTAGGAACTGGGGTTATTCCTTCCCAGCCTGATTCCCTTCTTGAAGGAAACGCTTCTGGTTCATCTGAAAATGATTCTTCTGACTCAGAGACTGATTCCGATTCTTCCAGGTCAGATCAGGACATGGATAATGAGATGACTGCACTTTCAGATTCTACTTTGCCTTCAGAAAAGGAGCTGAGTACATTTGAAAGAACGGACACACGAGAGCATGGAAATATGAGCAGCGAGGAACCTGATGATTCTGTGCATTCTGGTGATATGTCTCACCTTTATCATCACGACCCTGTATCTACTAATGAAGCAGTGTCTAAGTGGAAATTGAAGGGAAAAAGAAATGTTCGTAATTTTTCTAAAAAACTCGTTGGAGTAGATGAGGAACCATTAAGCCACCTATGGGTACATGCCCAAACAAGACTCAATAATAGGAATGATTACTTTGATGATAGCATGGATGGAGTTGATGCATTGGAAGAGGAATATTACTTTACGTCTAAAATGGTATCAAAAGATCAATATTTTGTCAGAAATTATTTGCTTGACTGGGAAGGTCAACCTGCTTTGAAAGGATATTGGGATGTAAAAAATCCCTTATATGGTATACCTCATCATTTTGGTGAGAGGCCAAGAACTATATTAATAGATGTTGATCTGAAGGTCCATGCAAGTTACCAAAAAGAGCCTGTTCCTATCGTATCACTTATGAGCAAGTTAAATGGGCAAGCTATAATTGGGCATCCTATTCAAATCGAAACTCTAGAAGATGGTTTTTCTGAAACTATTCTTTCTGATAGTCTAGGCAATGCACCTAGTGAAAATGATGGAAGCACAGCGCTCCAACCAGCTTGGAGGACTGCAAGGAGGACGGCAAATGTTCGTATCCCTCGCCCTCATTTACCAACAGTACCGGTTGGTAAAGAAGCTGGTTATGATTCACAAGAAAGGAAATCAAGATTGAAAAAAGTAAAAACTGGGGTCTACCTTTCGAAGGCAGGCCAGCCTCACATTCCCCGAGGACCTTCAAATGATAGAAGGCTCCCAAAAAAGATGGCTAAGAAAGTAAGCTTATCATCTAACCAGAAGACTAGAACTTTATCTTCAATAGATGTTGAGCAGAATTTTGGTAACATGCCAATACATGATAGTGTGTTTGTAGGAGCTGTGGTGTCTGAAAAGGTGAACTTCGACTCTCAGCATCGTTTTCTCTCTTCCCCCTGTCTTTCGCATTTGGTGTCCACTCAGCTGCCGTCGCCGTCGACTACTCAGCTACCGTCGCCGTCGACTTCTCAGCTACCACTGCCATTGACTCCTACTACCAAGGTTGAAGCTTTTGTTGAAATGGCTGGTCAATCAGATCCTCACCTGAACCTATTTTCTGCAGAAGAGGTCGAGTTTGTAGCTGAAGATGAAATGGTGGAGATTATTCCTAATATGAGAATGGATTCTCTGCATTTGATCTGTGGGGATTATGGTCCATTCTATCCCCAAATAGCAACTGAAGTTCCACTGTGGCTAGCAATTGCTCTGAAAAAAAGAGGGAAATGTGCAATTAGGACTCCAGAGTGGATGTCAGTGGAAAAGTTGACACAAATTTTGGAGGCAGAGCGAGATTCTCAAGGATCTTTCCAGATATTACCCTTTCATTACGTGGAAATATCAAAACTTCTTTTTGACCATGCACGAGATGACGTTCCTGACATGTATTTGGTGAGGTCTCTTATTGAAGATATCAGGGATGTTAGGTTTCACAAAGTTGAAACCAGCTTGGAGTCAATCGATACACGCACATCTGCAGTGAAGATTAAAGATCTATCTGCCATGGAAGTGAATATAGTTCGACCGTTCGTCATTAGAGCATTGCAAGCAATTTACAAGCATGGAAATCCAGAATTGGTCCCAGATCAAGATAGGATGACCAATATGCAGACACAAGGACACGATCATGGACAAAGACGGCGGCCTCTTCGAAGACGGTAA 2865 42.2 MGSPGSGAVDYAVGSIVWVRRRNGSWWPGKILGSDELSSSHLTSPRSGTPVKLLGREDASVDWYNLEKSKRVKPFRCGEFDDCIERAESSQGMPIKKREKYARREDAILHALELEKELLNKQGKLNLYSDQMTIESPGATAKEGILFSEHIGTDDHNDGHSESHQFSKTIHVSYDNEITEPCLKANEGAQRSGEDDHSESRPRMRGLQDFGLRITSSKRKFLSSSVVSNGFEMLATDTNALAPSNVCNIGNDCDANGMQQIDRAKRSKCMYLPADSSDSLECRESSLGQVEMSTPDLGTGVIPSQPDSLLEGNASGSSENDSSDSETDSDSSRSDQDMDNEMTALSDSTLPSEKELSTFERTDTREHGNMSSEEPDDSVHSGDMSHLYHHDPVSTNEAVSKWKLKGKRNVRNFSKKLVGVDEEPLSHLWVHAQTRLNNRNDYFDDSMDGVDALEEEYYFTSKMVSKDQYFVRNYLLDWEGQPALKGYWDVKNPLYGIPHHFGERPRTILIDVDLKVHASYQKEPVPIVSLMSKLNGQAIIGHPIQIETLEDGFSETILSDSLGNAPSENDGSTALQPAWRTARRTANVRIPRPHLPTVPVGKEAGYDSQERKSRLKKVKTGVYLSKAGQPHIPRGPSNDRRLPKKMAKKVSLSSNQKTRTLSSIDVEQNFGNMPIHDSVFVGAVVSEKVNFDSQHRFLSSPCLSHLVSTQLPSPSTTQLPSPSTSQLPLPLTPTTKVEAFVEMAGQSDPHLNLFSAEEVEFVAEDEMVEIIPNMRMDSLHLICGDYGPFYPQIATEVPLWLAIALKKRGKCAIRTPEWMSVEKLTQILEAERDSQGSFQILPFHYVEISKLLFDHARDDVPDMYLVRSLIEDIRDVRFHKVETSLESIDTRTSAVKIKDLSAMEVNIVRPFVIRALQAIYKHGNPELVPDQDRMTNMQTQGHDHGQRRRPLRRR* 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 9995868 10030131 + Chy7G136390.1 Chy07g00809 230820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00809 954 CDD GINS_A_psf2 808 924 - -
Chy07g00809 954 Pfam GINS complex protein 795 904 IPR021151 -
Chy07g00809 954 SUPERFAMILY PriA/YqbF domain 754 813 - -
Chy07g00809 954 MobiDBLite consensus disorder prediction 189 205 - -
Chy07g00809 954 MobiDBLite consensus disorder prediction 186 205 - -
Chy07g00809 954 MobiDBLite consensus disorder prediction 927 954 - -
Chy07g00809 954 Gene3D - 820 932 - -
Chy07g00809 954 MobiDBLite consensus disorder prediction 354 387 - -
Chy07g00809 954 ProSiteProfiles PWWP domain profile. 13 68 IPR000313 -
Chy07g00809 954 MobiDBLite consensus disorder prediction 709 728 - -
Chy07g00809 954 Gene3D - 6 126 - -
Chy07g00809 954 SUPERFAMILY Tudor/PWWP/MBT 10 117 - -
Chy07g00809 954 MobiDBLite consensus disorder prediction 279 322 - -
Chy07g00809 954 PANTHER T17B22.17 PROTEIN 1 677 - -
Chy07g00809 954 MobiDBLite consensus disorder prediction 592 612 - -
Chy07g00809 954 Gene3D - 754 819 - -
Chy07g00809 954 MobiDBLite consensus disorder prediction 277 392 - -
Chy07g00809 954 PANTHER T17B22.17 PROTEIN-RELATED 1 677 IPR044679 -
Chy07g00809 954 SUPERFAMILY GINS helical bundle-like 816 924 IPR036224 -
Chy07g00809 954 Pfam PWWP domain 14 94 IPR000313 -
Chy07g00809 954 MobiDBLite consensus disorder prediction 338 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00809 - - - csv:101221045 1314.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02219 Chy-Chr1:26653457 Chy07g00809 Chy-Chr7:9995868 1.30E-13 dispersed
Chy07g00809 Chy-Chr7:9995868 Chy04g00636 Chy-Chr4:7251789 4.33E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G14700 66.0 1.6e-267 919.1
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G14700 69.2 8.0e-155 544.7
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G14700 64.4 3.8e-48 190.3
Chy04g00760 . 107 798 Core DNA Replication Machinery Family AT4G12620 67.9 7.0e-276 946.8
Chy02g00078 . 1 376 Core DNA Replication Machinery Family AT4G12620 69.5 2.3e-154 543.1
Chy02g00080 . 83 223 Core DNA Replication Machinery Family AT4G12620 66.7 9.8e-52 202.2
Chy03g01522 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.5 1.1e-140 496.5
Chy10g00355 . 9 413 Core DNA Replication Machinery Family AT2G01120 64.6 1.8e-153 539.3
Chy11g01648 . 3 524 Core DNA Replication Machinery Family AT4G29910 58.2 8.9e-169 590.5
Chy05g00660 . 1 254 Core DNA Replication Machinery Family AT1G26840 66.5 2.4e-90 328.9
Chy01g00870 . 34 829 Core DNA Replication Machinery Family AT1G79150 57.8 2.5e-244 842.0
Chy04g01347 . 10 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1347.0
Chy02g00156 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 1.1e-267 919.1
Chy01g00756 . 1 821 Core DNA Replication Machinery Family AT2G16440 76.8 0.0e+00 1120.9
Chy05g01255 . 1 717 Core DNA Replication Machinery Family AT2G07690 77.8 0.0e+00 1078.2
Chy02g00002 . 7 840 Core DNA Replication Machinery Family AT5G44635 72.0 0.0e+00 1190.3
Chy01g01752 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.4
Chy11g01344 . 38 500 Core DNA Replication Machinery Family AT2G29680 60.9 1.2e-159 560.1
Chy11g01344 . 22 465 Core DNA Replication Machinery Family AT1G07270 58.2 1.5e-140 496.5
Chy01g01391 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.4 4.1e-257 884.0
Chy04g02091 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1085.5
Chy01g00231 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.8 2.7e-286 981.1
Chy11g00257 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.8 8.0e-116 414.1
Chy06g01182 . 7 192 Core DNA Replication Machinery Family AT1G77320 66.7 3.6e-72 270.4
Chy01g02007 . 1 196 Core DNA Replication Machinery Family AT1G80190 66.5 3.6e-72 268.1
Chy07g00809 . 743 887 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT1G19080 67.6 1.1e-62 236.5
Chy03g00186 . 22 191 Core DNA Replication Machinery Family AT3G55490 67.6 1.1e-62 236.5
Chy06g00159 . 2 164 Core DNA Replication Machinery Family AT5G49010 61.3 3.1e-49 191.8
Chy11g00218 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1748.0
Chy12g01485 . 81 704 Core DNA Replication Machinery Family AT1G67630 61.7 4.3e-217 751.1
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy09g00091 . 7 469 Core DNA Replication Machinery Family AT5G41880 61.1 1.5e-166 582.8
Chy08g00986 . 1 1000 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1652.1
Chy04g01776 . 41 282 Core DNA Replication Machinery Family AT2G42120 78.9 1.6e-117 419.9
Chy11g01796 . 8 447 Core DNA Replication Machinery Family AT1G67320 64.9 1.9e-183 639.0
Chy11g00894 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.3 0.0e+00 2984.5
Chy11g00894 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.8 0.0e+00 2949.5
Chy12g01602 . 1 258 Core DNA Replication Machinery Family AT5G22110 76.4 9.7e-119 424.1
Chy05g00194 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.5 1.3e-307 1052.4
Chy06g01971 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Chy08g00054 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.8 8.6e-178 619.8
Chy07g00561 . 1 334 Core DNA Replication Machinery Family AT1G21690 81.8 2.4e-153 538.5
Chy03g00774 . 6 220 Core DNA Replication Machinery Family AT1G77470 76.2 1.8e-93 339.7
Chy03g00775 . 1 216 Core DNA Replication Machinery Family AT1G77470 78.3 3.5e-89 325.5
Chy05g01462 . 26 618 Core DNA Replication Machinery Family AT2G06510 67.7 6.6e-250 860.1
Chy06g02198 . 28 701 Core DNA Replication Machinery Family AT2G06510 51.3 1.6e-200 696.0
Chy02g02440 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 3.7e-245 844.3
Chy06g02198 . 6 810 Core DNA Replication Machinery Family AT5G45400 53.1 9.1e-234 807.0
Chy02g02440 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 6.3e-240 827.0
Chy06g02198 . 1 796 Core DNA Replication Machinery Family AT4G19130 54.2 5.6e-230 794.3
Chy08g01078 . 1 373 Core DNA Replication Machinery Family AT5G26680 85.6 1.4e-182 636.0
Chy06g00300 . 1 1095 Core DNA Replication Machinery Family AT1G08840 52.9 2.9e-298 1021.5
Chy11g00843 . 2 759 Core DNA Replication Machinery Family AT1G08130 69.2 5.4e-297 1016.9
Chy11g00843 . 158 759 Core DNA Replication Machinery Family AT1G49250 69.3 4.9e-243 837.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002974 0 14 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00809 Chy_Chr07 FPKM 77.326859 81.490433 53.651867 55.243889 128.329437 127.760941 132.21077 38.059097 36.743614 35.563366