Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy07g00835 | ATGGATAACTTATGCTGCTTCAATTCTGTCTATTCTCAGTTTGTAGGAGGGCGTTCGTCATGTAGCTCTGGAAAGGGCAGGGGCAATATATGCCCTGTCAGGTATGGGTTTAGCCTAGTAAAAGGCAAGGCAAATCATCCAATGGAGGATTATCATGTCGCTCAATTTATTACCGTGCACGGCCGCGAGCTAGGTCTTTTTGCTATATATGATGGACATTTAGGAGACAGCGTGCCCGCCTATCTACAGAAGCATCTATTTCCTAATATACTGAAGGATGAGGAATTCTGGTCGAATCCTCGTAGCTCTATCTTTAAGGCTTACGAGAAGACAGACCAAGCAATACTCTCACACAGTCCTGACTTAGGTAGAGGTGGATCCACTGCTGTCACTGCAATTTTGATTAACGGTCAGAAATTATGGGTGGCTAATGTTGGAGATTCACGGGCAGTCCTTTCAAGAAAAGGGCAGGAATTGCAAATGTCTGTTGATCACGAGCCAAACACTGAGCGAGAAAGTATTGAGGATAGAGGTGGCTTTGTCTCTAACATGCCAGGAGATGTTGCAAGGGTGAATGGTCAGCTTGCAGTTTCTCGAGCATTCGGCGACAAGAACCTCAAGACACACTTGCGATCTGATCCTGACATAAGGAATGCCAATGTCGACTCTGACACTGAGCTTCTGATCTTAGCAAGTGATGGTCTATGGAAGGTGATGACAAATCAAGAAGCCGTGGATATAGCAAGAAAAACCAAGGATCCCCAGAGAGCAGCAAAGCAATTAGCAGCAGAAGCACTGAAAAGGGAAAGCAAAGACGACATCTCAATCATCGTAGTTCGTTTCAAAGGGTAA | 852 | 45.19 | MDNLCCFNSVYSQFVGGRSSCSSGKGRGNICPVRYGFSLVKGKANHPMEDYHVAQFITVHGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKDEEFWSNPRSSIFKAYEKTDQAILSHSPDLGRGGSTAVTAILINGQKLWVANVGDSRAVLSRKGQELQMSVDHEPNTERESIEDRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIRNANVDSDTELLILASDGLWKVMTNQEAVDIARKTKDPQRAAKQLAAEALKRESKDDISIIVVRFKG* | 284 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 10720972 | 10724869 | - | Chy7G136650.1 | Chy07g00835 | 230846 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy07g00835 | 283 | MobiDBLite | consensus disorder prediction | 161 | 181 | - | - | |
| Chy07g00835 | 283 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 281 | IPR001932 | - | |
| Chy07g00835 | 283 | Gene3D | - | 29 | 283 | IPR036457 | - | |
| Chy07g00835 | 283 | CDD | PP2Cc | 33 | 281 | IPR001932 | - | |
| Chy07g00835 | 283 | Pfam | Protein phosphatase 2C | 43 | 274 | IPR001932 | - | |
| Chy07g00835 | 283 | PANTHER | PHOSPHATASE 2C FAMILY PROTEIN | 1 | 282 | - | - | |
| Chy07g00835 | 283 | MobiDBLite | consensus disorder prediction | 161 | 177 | - | - | |
| Chy07g00835 | 283 | SUPERFAMILY | PP2C-like | 29 | 282 | IPR036457 | - | |
| Chy07g00835 | 283 | SMART | PP2C_4 | 30 | 279 | IPR001932 | - | |
| Chy07g00835 | 283 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 282 | IPR015655 | GO:0004722|GO:0006470 | |
| Chy07g00835 | 283 | SMART | PP2C_SIG_2 | 45 | 281 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy07g00063 | Chy-Chr7:582051 | Chy07g00835 | Chy-Chr7:10720972 | 2.13E-108 | dispersed | |
| Chy07g00305 | Chy-Chr7:2510023 | Chy07g00835 | Chy-Chr7:10720972 | 4.22E-67 | dispersed | |
| Chy07g00835 | Chy-Chr7:10720972 | Chy12g00307 | Chy-Chr12:3345550 | 8.66E-38 | dispersed | |
| Chy07g00835 | Chy-Chr7:10720972 | Chy04g00256 | Chy-Chr4:2272719 | 1.90E-159 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy07g00835 | K17506 | - | csv:101214223 | 561.992 |