Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00856 ATGGGTACAAGAACACAGCAACCATCCCGAGAAGACGACGATGACGACCTCCCAAGTGGCCCTGGTGCCACCACGATTTCGGGTCAGTCTGTTTCAATGAGTGGCAGTGTGGGTTCTCCTTCGAGTCGCAGCGAGCAAACCATGGCCACGCCTGCCAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGACGAGGCGGGTAATGTGAAGAAAAAGAGGGGTCAACGTGCTGTTGGAGGGGACAAGAGTGGAAGGGGGCTTCGCCAATTCAGCATGAAAGTTTGCGAGAAAGTGGAGAGTAAGGGAAGAACGACATATAACGAGGTTGCAGATGAACTTGTCGCAGAGTTTGCTGATCCTGGCAACAGTGTTGCATCACCAGATCAGCAGCAACAGTATGACGAAAAAAATATCAGGCGGAGGGTATATGATGCCCTGAATGTCCTCATGGCAATGGATATTATATCAAAGGATAAGAAGGAGATACAATGGAAGGGTCTTCCACGTACCAGCATGAATGATATTGAAGAACTAAAGGCGGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCAGCATACTTGCAAGAGTTGGAGGAACAGTATGTAGGTCTTCAGAACCTAATACAGCGAAATGAACAGTTATTCAATTCGGAGAATGCCCCCAGTGGTGGCGTGTCTTTGCCTTTCATCCTGGTGCAGACGAGGCCTCATGCCACTGTTGAGATAGAAATTTCAGAAGATATGCAGTTGGTCCATTTTGACTTCAACAGTACTCCTTTTGAGCTCCATGATGACAATTATGTTCTGAAGGCAATGAAATTTTGCAACAGACCTCAATGCGATAATACAGCACAAAATTTTACTCCTGATGGTGGGGAGGGTTCTAGCATGTCAGGCATGTACCAACCACCCCATATCCCTATTCCTTCATTGTCTAACACGCCGGTTAGAACGCCAACCTCACCACCACTTCCTGGAATCATAAAAGCTCGCGTCAAACACGAACATTAA 1029 46.94 MGTRTQQPSREDDDDDLPSGPGATTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDEAGNVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVASPDQQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSMNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFNSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCNRPQCDNTAQNFTPDGGEGSSMSGMYQPPHIPIPSLSNTPVRTPTSPPLPGIIKARVKHEH* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11257071 11261306 + Chy7G136860.1 Chy07g00856 230867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00856 342 Pfam E2F/DP family winged-helix DNA-binding domain 89 170 IPR003316 GO:0005667|GO:0006355
Chy07g00856 342 MobiDBLite consensus disorder prediction 68 89 - -
Chy07g00856 342 Gene3D Transcription factor DP 176 298 IPR038168 -
Chy07g00856 342 SUPERFAMILY Winged helix DNA-binding domain 89 171 IPR036390 -
Chy07g00856 342 PANTHER TRANSCRIPTION FACTOR DP 22 342 IPR015648 GO:0005667|GO:0051726
Chy07g00856 342 SMART E2F_TDP_2 86 170 IPR003316 GO:0005667|GO:0006355
Chy07g00856 342 MobiDBLite consensus disorder prediction 1 55 - -
Chy07g00856 342 Coils Coil 186 220 - -
Chy07g00856 342 MobiDBLite consensus disorder prediction 68 83 - -
Chy07g00856 342 Pfam Transcription factor DP 178 285 IPR014889 -
Chy07g00856 342 Gene3D - 82 175 IPR036388 -
Chy07g00856 342 MobiDBLite consensus disorder prediction 22 55 - -
Chy07g00856 342 PIRSF Txn_factor_DP 3 342 IPR015648 GO:0005667|GO:0051726
Chy07g00856 342 SMART DP_2 177 340 IPR014889 -
Chy07g00856 342 CDD DP_DD 175 278 IPR014889 -
Chy07g00856 342 PANTHER TRANSCRIPTION FACTOR DP 22 342 - -
Chy07g00856 342 SUPERFAMILY E2F-DP heterodimerization region 177 289 IPR037241 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00856 K04683 TFDP1; transcription factor Dp-1 - csv:101216863 657.136
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy07g00856 . 65 279 E2F-DP Transcription Factor Family AT5G02470 53.5 4.2e-61 231.9
Chy05g00206 . 67 481 E2F-DP Transcription Factor Family AT5G22220 56.5 1.9e-108 389.8
Chy08g00971 . 11 460 E2F-DP Transcription Factor Family AT2G36010 53.5 1.0e-117 420.6
Chy05g00206 . 68 488 E2F-DP Transcription Factor Family AT2G36010 54.0 6.4e-115 411.4
Chy03g01393 . 150 254 E2F-DP Transcription Factor Family AT1G47870 72.4 7.4e-37 151.8
Chy12g01298 CCT 3 352 E2F-DP Transcription Factor Family AT3G48160 52.6 7.7e-90 327.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18306 PF08781 DP 2.60E-41 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00856 Chy_Chr07 FPKM 0.0 0.0 1.283183 1.895229 0.92558 1.007599 0.757725 0.273944 0.851255 0.0