Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00958 ATGGATTTGACTAGTGGCGATGATGGGAGGTATATTTGTTATGGATTTGACTTATTCTTAGATATGAATGAAGGCTACAGAAATAGTCTTCCCATTATTCTTTCTTGTGGTGGGTTGTCCTCCCACCACAAGGGTTGGGAAGGAATTGAGGTACACGTAAAGACGGGAAAATCCAATGGTTTCCCTGATGGAAAGAGTGAAGACCTAGCTGCAACTCGAATTCAAAATGCATTTCGTACATTTACGGCTAGAAAGGACGTACATAATTCGAAAGTGCCAGAGAGATGCCAGGATCTAGTTCAAGGTGAAACGGCTACAAAACAAGTGTCAAGCTTCATTCATTCATGGAGCAGAATGCAGCAAGAAATTAGAGCACGTAGACTCTGTATGGTAACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAGGCAGAATGGTCCGGTGGGTCAGAAACAAAGGAGGAAATACTTTTCAAGATTCAGCAACGAGAAGAAGCTGCTGTAAGACGGGAGCGGGCTATGGCTTATGCATTCTCTCATCAGTGGAGGGCCAATTCCATCTTAGATCTGAGCGCGGCTTCATATAGTCTTGACAAAGAAAACTGGGGATGGAGCTGGAAGGAGAGATGGATTGCTGCTCGGCCATGGGAGATCCGAGCTAATAGTCATCCCACCATTCCAAAGAAGGTGCAAATGAAACAAACAAGCAAAGTCAATAAAGTGACGTATCAATCGGGGTTGAAGGTCTCCAACTTAGCTGGACATTCTTCGTTGAACAACAAGGCGAGTTCAAAGGCCAAAAATTCTGCTATATCCAACTGCTGA 861 43.55 MDLTSGDDGRYICYGFDLFLDMNEGYRNSLPIILSCGGLSSHHKGWEGIEVHVKTGKSNGFPDGKSEDLAATRIQNAFRTFTARKDVHNSKVPERCQDLVQGETATKQVSSFIHSWSRMQQEIRARRLCMVTEYRVKQKKLENQLKLEAKIHELEAEWSGGSETKEEILFKIQQREEAAVRRERAMAYAFSHQWRANSILDLSAASYSLDKENWGWSWKERWIAARPWEIRANSHPTIPKKVQMKQTSKVNKVTYQSGLKVSNLAGHSSLNNKASSKAKNSAISNC* 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14202843 14206977 + Chy7G137880.1 Chy07g00958 230969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00958 286 ProSiteProfiles IQ motif profile. 67 95 IPR000048 GO:0005515
Chy07g00958 286 PANTHER IQ-DOMAIN 5-RELATED 52 278 - -
Chy07g00958 286 Coils Coil 137 157 - -
Chy07g00958 286 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 52 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00958 - - - csv:101206595 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00479 Chy-Chr1:3462528 Chy07g00958 Chy-Chr7:14202843 3.43E-15 dispersed
Chy02g00253 Chy-Chr2:1645222 Chy07g00958 Chy-Chr7:14202843 3.60E-70 dispersed
Chy07g00958 Chy-Chr7:14202843 Chy09g00721 Chy-Chr9:9637359 7.68E-26 dispersed
Chy07g00958 Chy-Chr7:14202843 Chy10g01339 Chy-Chr10:17688916 1.27E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g140 . . . . . . Bma10g00484 . Cmo16g00447 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1038 Cone15ag1024 . . . . Blo07g00960 . Bda05g00781 . . Bpe03g00849 . . . . . . Cma16g00415 . Car16g00380 Cpe14g00349 . . . . . . . . Cla07g00945 Cam07g1020 Cec07g1090 Cco07g1069 Clacu07g0989 Cmu07g0985 Cre07g1360 . . Chy07g00958 Cme07g01328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g00721 . 1 499 IQD Protein Family AT3G52290 51.7 2.2e-98 356.3
Chy02g01601 . 1 295 IQD Protein Family AT3G22190 62.5 6.6e-76 281.6
Chy07g00252 . 1 466 IQD Protein Family AT2G26180 56.8 1.5e-112 403.3
Chy02g00253 . 1 274 IQD Protein Family AT2G33990 52.9 4.0e-63 238.4
Chy07g00958 . 65 240 IQD Protein Family AT2G33990 54.7 1.3e-48 190.3
Chy02g00253 . 1 232 IQD Protein Family AT3G15050 50.9 4.7e-56 214.9
Chy07g00958 . 68 241 IQD Protein Family AT3G15050 61.6 9.8e-54 207.2
Chy11g01727 . 1 513 IQD Protein Family AT4G00820 50.4 6.4e-108 388.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00958 Chy_Chr07 FPKM 28.950377 27.833147 37.132908 34.723858 38.852409 39.779045 41.329426 42.086998 42.267208 41.30619