Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00961 ATGGCTTCAGTGCTGCAAGGTGGTGGTGATGCGGGAGGGAATCCCAGAAAGACGGATAATGACAAGTTTAATGCCGGAAAGCAACAGAAACAGAGTAAAATTGCTAAACACTTAGCTCGTAATTCCCTTCAGACTCCCACTGTCGCGGCCACCAATGGCGGTGCTAATCCGTCTTCTCTGTCTCATAATCCGATCGATGCTTTGGTCACGTCTAGGTTTTATTCGGGTCAAAATCACTGCAGTGAACCGGTTAATGCCGAGGAAGTGCCAGTATATACGAGGTTTGAGAACCGAGTTAGGATTAATTTGAATTCAAGATCGAGGTCTGGGATTAAAGAACTTACAACGAAGCTGAAGGGTGAGCTCGATCAGGTTAGGAGCCTCGTGAAGAAGTTTGAAACTCAGGAGCTGCAGCTTAGTGGTTATGGTGGTGATGTTGGACATAGTCAATCACAGTTTTCAGCTAATAATTTGGTAGAGAGGGTGGGTACTGTTAGTACAAAGAAGGTTAATTCCGAGGTGGGTTCTGCAGATGTGCCTGCATCGAGGCTTGTTCGATGTGCTTCGGTGGCAGAAAACTTTGGAGAGTTTGCAGAGAAAGAGGTGAGCAAGCATAAAAATTCAAAATATGCTTCTACAAAGGAGCTTCCGATGTCGGACTGTAATTTGAATGGAGGTAAGATTGGTCCAGTGCTTAAAAGCTGTAGTAATTTACTGGAAAGATTGATGAAACATAAATTTGGTTGGGTATTTAATGTGCCTGTTGATGCAAAGCGTTTGGGGCTTCATGATTATCATAAGATCATAACGAAGCCAATGGATTTGGGTACCATAAAGATGAGACTGAATAAGAATTGGTACAAATCACCAAGAGAGTTTGCTGAGGATGTGAGACTAACATTTAGCAATGCCATTACATATAATCCAAAAGGGGAGGATGTTCATATAATGGCTGAGCAGTTGTCTAATGTATTCGAAGAGAAATGGAAGACAATTGAAGGTAAACAAAATGTTGGTAAGGGATTTCAGGTGGATGATGGCTCAGTTTTACCTACACCCACCTCTAGGAAATCTCCAGCTCTTGCCACTCGTCCAGTGGAATCGAGAACTTTCAGTAGATCGGATTCTACAACGAAGCATCTGCCTACCTCCAATCCCAAACAGCCCCCCACAGATGTTGCTCCTTCTGATAAGAAACCAAAAGCAAAGAATCACGAAATCAGAGATATGACTTATGAAGAAAAACAGAAACTGAGCATTGACCTTCAGGATTTACCATCAGATAAATTGAATAATGTTGTCAAGATTATCAAGAAAAGAAACCAGGGACTGTTCCAAAACGACGATGAAATTGAGTTGGATATTGGCAGTGTTGATTCTGAAACCCTCTGGGAACTTGAGAGGTTTGTAGCAAATTACAAAAAAAGTTTGATCAAGAATAAGAGAAAAGCTGGTGCCAATCTTCAATCTGGAGAAAAATTGTCTCACTACTCGACCAATGATACTGATTTTCTTGCAGTGGCTAAAGCAGGAGGAAAACCTGTAGGTGGCAATGCAGACTCTGAAAATGATAGTTCCTCGACATGTGGGGATGGAAATCAGTCTTCTTCAGGTTGA 1617 41.99 MASVLQGGGDAGGNPRKTDNDKFNAGKQQKQSKIAKHLARNSLQTPTVAATNGGANPSSLSHNPIDALVTSRFYSGQNHCSEPVNAEEVPVYTRFENRVRINLNSRSRSGIKELTTKLKGELDQVRSLVKKFETQELQLSGYGGDVGHSQSQFSANNLVERVGTVSTKKVNSEVGSADVPASRLVRCASVAENFGEFAEKEVSKHKNSKYASTKELPMSDCNLNGGKIGPVLKSCSNLLERLMKHKFGWVFNVPVDAKRLGLHDYHKIITKPMDLGTIKMRLNKNWYKSPREFAEDVRLTFSNAITYNPKGEDVHIMAEQLSNVFEEKWKTIEGKQNVGKGFQVDDGSVLPTPTSRKSPALATRPVESRTFSRSDSTTKHLPTSNPKQPPTDVAPSDKKPKAKNHEIRDMTYEEKQKLSIDLQDLPSDKLNNVVKIIKKRNQGLFQNDDEIELDIGSVDSETLWELERFVANYKKSLIKNKRKAGANLQSGEKLSHYSTNDTDFLAVAKAGGKPVGGNADSENDSSSTCGDGNQSSSG* 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14259612 14261669 + Chy7G137910.1 Chy07g00961 230972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00961 538 CDD Bromo_plant1 231 329 IPR037377 -
Chy07g00961 538 PANTHER OSJNBA0053K19.4 PROTEIN 3 538 - -
Chy07g00961 538 MobiDBLite consensus disorder prediction 519 538 - -
Chy07g00961 538 Pfam Bromodomain extra-terminal - transcription regulation 410 471 IPR027353 -
Chy07g00961 538 MobiDBLite consensus disorder prediction 1 42 - -
Chy07g00961 538 ProSiteProfiles Bromodomain profile. 243 315 IPR001487 GO:0005515
Chy07g00961 538 Gene3D - 189 345 IPR036427 GO:0005515
Chy07g00961 538 Gene3D - 403 482 IPR038336 -
Chy07g00961 538 SUPERFAMILY Bromodomain 224 335 IPR036427 GO:0005515
Chy07g00961 538 PRINTS Bromodomain signature 278 296 IPR001487 GO:0005515
Chy07g00961 538 PRINTS Bromodomain signature 246 259 IPR001487 GO:0005515
Chy07g00961 538 PRINTS Bromodomain signature 262 278 IPR001487 GO:0005515
Chy07g00961 538 PRINTS Bromodomain signature 296 315 IPR001487 GO:0005515
Chy07g00961 538 SMART bromo_6 224 334 IPR001487 GO:0005515
Chy07g00961 538 MobiDBLite consensus disorder prediction 509 538 - -
Chy07g00961 538 ProSiteProfiles NET domain profile. 400 481 IPR027353 -
Chy07g00961 538 PANTHER TRANSCRIPTION FACTOR GTE4-LIKE ISOFORM X1 3 538 - -
Chy07g00961 538 MobiDBLite consensus disorder prediction 340 411 - -
Chy07g00961 538 Pfam Bromodomain 235 319 IPR001487 GO:0005515
Chy07g00961 538 MobiDBLite consensus disorder prediction 394 411 - -
Chy07g00961 538 MobiDBLite consensus disorder prediction 27 42 - -
Chy07g00961 538 MobiDBLite consensus disorder prediction 348 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00961 - - - csv:101210418 1038.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00961 Chy-Chr7:14259612 Chy11g01424 Chy-Chr11:20959793 1.70E-103 dispersed
Chy07g00961 Chy-Chr7:14259612 Chy02g02647 Chy-Chr2:29516699 6.41E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g137 . . . . . . Bma10g00481 . Cmo16g00449 Cmo04g00605 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1035 Cone15ag1021 . . . . . . Bda05g00783 . . Bpe03g00850 . . . . . Cma04g00565 Cma16g00417 Car04g00536 Car16g00382 Cpe14g00351 Cpe01g00510 . . . . . . . Cla07g00947 Cam07g1022 Cec07g1092 Cco07g1071 Clacu07g0991 Cmu07g0987 Cre07g1362 . . Chy07g00961 Cme07g01330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003323 2 4 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 9 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00961 Chy_Chr07 FPKM 8.250851 8.784404 12.206629 12.613029 40.332218 37.573326 43.019161 15.635118 14.294127 15.848264