Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00978 ATGAAGATTCAGTGCAACGTCTGTGAGATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCTAAATGCGACATCTGTCAGGAAGCTAGTGGATATATCTTCTGTTTAGAGGATCGGGCGTTACTTTGCAGAAAGTGTGATGTTGCCATACACACGGCAAATACTTATGTAACTGGTCATCAACGCTTTCTGCTTACTGGTGTGAAAGTGGCACTCGAGCCTACCGATCCTGTTGCTTGTTCTTCCATGGCTAAGTCACATTCTCGAGAGAAGTCTACTGAGACTAAAGTTAGACCACCATCTGAAAGGGAATTCTCGATGCCTTCTCCTGCTGAACTCAGCAGAAGCCTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACGTTGCTTACCGGAAGCGGAGATTCTGGTTCTGGTGGCTTTTCACAGTGGCAAATGGATGAACTTATTAGTCTGACCGGATTCAATCAGAACTATGGGTATATGGACAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATTGAACTGGACGATGACGATGAATGCTCGGGTCAGGTTCCAGAAGCTTCCTGGGCTGTGCCTCAGATTCCCTCTCCACCTACAGCATCAGGCTTATACTGGCCAAGGAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTGTTCTTCAGAAAAGGTTCAACATTGCTCACGCAATGGTACATTTTCGAAACGAAGAAGACAGTTCTAG 894 47.09 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKSTETKVRPPSEREFSMPSPAELSRSLSVLGGSEDFMANRTLLTGSGDSGSGGFSQWQMDELISLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDDECSGQVPEASWAVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDICSSEKVQHCSRNGTFSKRRRQF* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14401365 14403757 - Chy7G138080.1 Chy07g00978 230989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00978 297 MobiDBLite consensus disorder prediction 121 135 - -
Chy07g00978 297 SMART bboxneu5 4 47 IPR000315 GO:0008270
Chy07g00978 297 SMART bboxneu5 52 99 IPR000315 GO:0008270
Chy07g00978 297 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Chy07g00978 297 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Chy07g00978 297 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Chy07g00978 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Chy07g00978 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 296 - -
Chy07g00978 297 Gene3D Classic Zinc Finger 1 92 - -
Chy07g00978 297 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 296 - -
Chy07g00978 297 CDD Bbox1_BBX-like 5 47 - -
Chy07g00978 297 MobiDBLite consensus disorder prediction 115 146 - -
Chy07g00978 297 CDD Bbox1_BBX-like 56 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00978 - - - csv:101209756 592.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00978 Chy-Chr7:14401365 Chy11g01928 Chy-Chr11:25396317 1.42E-44 dispersed
Chy07g00978 Chy-Chr7:14401365 Chy03g01411 Chy-Chr3:16842241 2.41E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01067 . 6 328 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 2.1e-38 156.8
Chy03g01067 . 1 320 C2C2-CO-like Transcription Factor Family AT5G24930 63.2 4.5e-81 298.5
Chy02g02192 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.9 5.3e-58 221.9
Chy02g02192 . 1 376 C2C2-CO-like Transcription Factor Family AT5G57660 52.1 1.0e-69 260.8
Chy02g02191 CCT 15 366 C2C2-CO-like Transcription Factor Family AT5G57660 50.6 3.1e-58 222.6
Chy03g01067 . 2 331 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.6e-52 201.8
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 7.1e-90 327.8
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 6.0e-89 324.7
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT1G75540 65.9 2.4e-41 166.4
Chy07g00978 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.5 1.1e-78 290.4
Chy07g01229 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 60.9 3.4e-55 211.5
Chy02g00591 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Chy07g01229 . 1 201 C2C2-CO-like Transcription Factor Family AT4G38960 60.2 2.3e-57 218.8
Chy02g00591 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT4G39070 67.7 2.6e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18311 PF00643 zf-B_box 3.60E-07 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g00978 Chy_Chr07 FPKM 9.351536 9.608518 13.581268 14.197283 14.21454 10.845177 14.962554 19.90237 21.063166 23.004389