Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00978 ATGAAGATTCAGTGCAACGTCTGTGAGATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCATCTCAGATGCCTAAATGCGACATCTGTCAGGAAGCTAGTGGATATATCTTCTGTTTAGAGGATCGGGCGTTACTTTGCAGAAAGTGTGATGTTGCCATACACACGGCAAATACTTATGTAACTGGTCATCAACGCTTTCTGCTTACTGGTGTGAAAGTGGCACTCGAGCCTACCGATCCTGTTGCTTGTTCTTCCATGGCTAAGTCACATTCTCGAGAGAAGTCTACTGAGACTAAAGTTAGACCACCATCTGAAAGGGAATTCTCGATGCCTTCTCCTGCTGAACTCAGCAGAAGCCTGTCTGTACTAGGTGGATCTGAGGACTTTATGGCAAATAGAACGTTGCTTACCGGAAGCGGAGATTCTGGTTCTGGTGGCTTTTCACAGTGGCAAATGGATGAACTTATTAGTCTGACCGGATTCAATCAGAACTATGGGTATATGGACAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGATTCTGATTCATCACCAGTTTTGAGAGCTGCTGACATTGAACTGGACGATGACGATGAATGCTCGGGTCAGGTTCCAGAAGCTTCCTGGGCTGTGCCTCAGATTCCCTCTCCACCTACAGCATCAGGCTTATACTGGCCAAGGAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTGTTCTTCAGAAAAGGTTCAACATTGCTCACGCAATGGTACATTTTCGAAACGAAGAAGACAGTTCTAG 894 47.09 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKSTETKVRPPSEREFSMPSPAELSRSLSVLGGSEDFMANRTLLTGSGDSGSGGFSQWQMDELISLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDDDDECSGQVPEASWAVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDICSSEKVQHCSRNGTFSKRRRQF* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14401365 14403757 - Chy7G138080.1 Chy07g00978 230989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00978 297 MobiDBLite consensus disorder prediction 121 135 - -
Chy07g00978 297 SMART bboxneu5 4 47 IPR000315 GO:0008270
Chy07g00978 297 SMART bboxneu5 52 99 IPR000315 GO:0008270
Chy07g00978 297 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Chy07g00978 297 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Chy07g00978 297 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Chy07g00978 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Chy07g00978 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 296 - -
Chy07g00978 297 Gene3D Classic Zinc Finger 1 92 - -
Chy07g00978 297 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 296 - -
Chy07g00978 297 CDD Bbox1_BBX-like 5 47 - -
Chy07g00978 297 MobiDBLite consensus disorder prediction 115 146 - -
Chy07g00978 297 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00978 Chy-Chr7:14401365 Chy11g01928 Chy-Chr11:25396317 1.42E-44 dispersed
Chy07g00978 Chy-Chr7:14401365 Chy03g01411 Chy-Chr3:16842241 2.41E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18311 PF00643 zf-B_box 3.60E-07 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00978 - - csv:101209756 592.038