Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g00990 ATGTCTCTTCGCCGATCCTTTCTCTCCCGGAGGTTCTCTTCCAAGTCTTCCTCTAGAGGAGATCTCAATGCTCTTCCTGGAATTCTTCCCCTCTCCTCCTCCTCCTCCGACTTTGATCATTCCTCCCCTCTCTCTGGAGGTTCTCATCCTCAATCCTCTTGGTCTTCCATGCTTCCCGAGCTTCTTCGGGAGATCATTCAGCGGGTTGAGGCTGAAGAACATGGTTGGCCCAATCGCCAGAACGTTGTTTCTTGTGCTTGTGTTTGTAAACGTTGGCGGGATATTACTAAAGAGGTCGCCAGGGCCACACCTCATTCCGGCAAAATTACTTTCCCTTCTTGTCTCAAACAGCCTGGACCAAGTGATCTTCCACATCAGTGTCTTATAAAAAGGAATAAGAAGACTTCAACATTTTTCCTTTATCTTGCCCTTACACCAACATTTACAGATAAGGGAAAATTCCTCTTAGCCGCACGGAGATATAGGTATGGAGCTCATACTGAGTATATCATATCCCTCGATGCTGAAGACTTATCCCAAGGAAGCAATGCTTATGTGGGGAAGTTAAGCTCCGATTTTCTTGGCACAAATTTTACCATTTATGACAGCCAACCACCACATAACGGTGCAAAGCCATCAAGCAGTAAATCAAGCCGCCGGTTTGCAAGCAAGCAAATTAGCCCACAAGTGTCAGCAGGTAACTTTGAGGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGCCCAAGGCGAATGATATGCTCTCTAAAATGCCCATTATCCGAAGACAATGGAAGCAACAAACCTTGTGAGAACTCGAAGATGAAGAAATCTGAGTCTCTTTCTTCCTCATCTGGGTTGACAATCTTAAGAAACAAGGCACCTAGGTGGCACGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTTACAGTAGCATCTGTTAAGAACTTTCAACTTGTTGCTACTGTTGACCATACCCAGCCAGGAGGCAAAGGGGACGAAGAAACAGTTCTACTACAGTTTGGAAAGGTAGGCGACGATACGTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTTGGCACTAAGCTGGCTTTCTTTTTTGGGCCGAAAGTGAAAAGGGCTGAAGGCCCACTAACGGAAAACTCCCCGATCGGCAGAAGCTCCGAGGAATCTTCTTCTCTCTTCCGAGCTCGTTTTCGCGACGCCGAAGTGAAGAAAACTATGGAACAAAGGCGATCGAAGATGAGGATCGCCATAATCCACCCAGACCTTGGTATAGGTGGAGCTGAGAGATTGATTGTAGATGCTGCTGTTGAACTTGCTTCGCAAGGACACAACGTCCATATTTTTACATCACACCACGACAAAAATCGGTGCTTTGAGGAGACCCTTGCTGGAACATTTCCTGTTACTGTGTATGGTGATTTCCTACCCCGCCACATCTTTTACCGCCTTCATGCAGTTTGCGCATACCTACGGTGTATTTTTGTCACTCTTTGCATGCTGTTCATGTGGTCATCATTTGATGTCGTACTAGCAGATCAGGTTTCTGTTGTTGTTCCAATACTCAAACTGAAAAGGTCATCAAAGGTTGTATTTTATTGTCATTTTCCGGATCTCTTACTGGCCAAGCACACTACAATTTTGAGGAGGCTGTATAGAAAACCCATAGACTTAATCGAAGAACTGACAACCGGAATGGCAGATCTGATATTAGTTAATAGCAAATTTACTGCATCCACTTTTGCCAAGACATTCAAACATCTTGAAGCACGAGGAGTTCGACCTGCTGTTCTCTATCCAGCGGTTAATGTAGATCAGTTTGATGAGCCCCATTCTTCTAAGTTGAGTTTTCTTTCTATCAACCGTTTTGAAAGGAAGAAAAACATTGAATTAGCTATCTCAGCCTTTGCCAAGCTTGGCACACTTGAAGGATGCACTCTTCAAGATTACAATGTATCTGATGTTTCCTTGGTCATTGCTGGAGGTTTCGATAAACGGCTTAGAGAGAATGTTGAATACTTGGAGGAGCTCAAGAATTTAGCTGAAAGAGAAGGTGTATCAGAACGTGTTACCTTCATCACATCCTGCTCAACACTCGAAAGAAACGCGCTCCTTTCCCAATGCCTGTGTGTTCTTTACACGCCGAAGGATGAGCATTTTGGCATTGTTCCTTTGGAAGCCATGGCAGCTTACAAGCCAGTTATTGCATGCAACAGTGGGGGTCCAGTTGAGACCATAAAACATGGCACCACGGGATTTCTTTGCTCGCCTAATTCTCAAGAGTTCTCTGTGGCAATGGCGAAACTCGTTCAGGATCCTGCCATGGCAGCAAGAATGGGTAGGGAAGCCCGACAACACATTGTGAATTCTTTCTCTACACAGATATTTGGTCAGCAACTGAATCAATACGTTGTGGATGTCGCTCGACTTAAGAGAGACTGA 2496 44.91 MSLRRSFLSRRFSSKSSSRGDLNALPGILPLSSSSSDFDHSSPLSGGSHPQSSWSSMLPELLREIIQRVEAEEHGWPNRQNVVSCACVCKRWRDITKEVARATPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFFLYLALTPTFTDKGKFLLAARRYRYGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPLSEDNGSNKPCENSKMKKSESLSSSSGLTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDHTQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLAFFFGPKVKRAEGPLTENSPIGRSSEESSSLFRARFRDAEVKKTMEQRRSKMRIAIIHPDLGIGGAERLIVDAAVELASQGHNVHIFTSHHDKNRCFEETLAGTFPVTVYGDFLPRHIFYRLHAVCAYLRCIFVTLCMLFMWSSFDVVLADQVSVVVPILKLKRSSKVVFYCHFPDLLLAKHTTILRRLYRKPIDLIEELTTGMADLILVNSKFTASTFAKTFKHLEARGVRPAVLYPAVNVDQFDEPHSSKLSFLSINRFERKKNIELAISAFAKLGTLEGCTLQDYNVSDVSLVIAGGFDKRLRENVEYLEELKNLAEREGVSERVTFITSCSTLERNALLSQCLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSGGPVETIKHGTTGFLCSPNSQEFSVAMAKLVQDPAMAARMGREARQHIVNSFSTQIFGQQLNQYVVDVARLKRD* 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14575065 14584079 - Chy7G138200.1 Chy07g00990 231001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g00990 831 Pfam Tub family 115 378 IPR000007 -
Chy07g00990 831 Gene3D Tubby Protein; Chain A 113 377 IPR025659 -
Chy07g00990 831 Gene3D Glycogen Phosphorylase B; 428 628 - -
Chy07g00990 831 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 381 - -
Chy07g00990 831 Pfam F-box domain 54 98 IPR001810 GO:0005515
Chy07g00990 831 PANTHER TUBBY-RELATED 1 381 - -
Chy07g00990 831 Pfam Glycosyltransferase Family 4 443 623 IPR028098 -
Chy07g00990 831 CDD GT4_ALG2-like 432 818 - -
Chy07g00990 831 Gene3D Glycogen Phosphorylase B; 629 825 - -
Chy07g00990 831 SUPERFAMILY Tubby C-terminal domain-like 105 381 IPR025659 -
Chy07g00990 831 Gene3D - 48 100 - -
Chy07g00990 831 ProSitePatterns Tub family signature 1. 311 324 IPR018066 -
Chy07g00990 831 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Chy07g00990 831 PRINTS Tubby superfamily signature 311 327 IPR000007 -
Chy07g00990 831 PRINTS Tubby superfamily signature 293 310 IPR000007 -
Chy07g00990 831 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Chy07g00990 831 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Chy07g00990 831 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Chy07g00990 831 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Chy07g00990 831 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 432 820 - -
Chy07g00990 831 Pfam Glycosyl transferases group 1 631 803 IPR001296 GO:0016757
Chy07g00990 831 Coils Coil 682 702 - -
Chy07g00990 831 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00021 Chy-Chr1:165056 Chy07g00990 Chy-Chr7:14575065 0 dispersed
Chy07g00990 Chy-Chr7:14575065 Chy07g01239 Chy-Chr7:17147729 5.24E-109 dispersed
Chy10g00395 Chy-Chr10:9570967 Chy07g00990 Chy-Chr7:14575065 7.20E-07 dispersed
Chy12g01568 Chy-Chr12:19242467 Chy07g00990 Chy-Chr7:14575065 2.57E-08 dispersed
Chy07g00990 Chy-Chr7:14575065 Chy11g01469 Chy-Chr11:21443334 4.42E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18313 PF01167 Tub 7.30E-102 CL0395 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g00990 K03843 - csv:101211733 798.89