Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01013 ATGGCTTCTGCTGCTTCTTCCTCTCCAGCATTTCTCTCGGAGGTTCCATTAATAGACCTTTCTTCACCAGATGCTAAACAACTCATTGTTAAAGCCTGTGAAGAACTTGGTTTTTTCAAGGTCGTCAACCATGGCGTTCCTATGGAATTTATCTCCACTCTCGAATCAGAATCCACTAATTTCTTCTCCCTTCCCCTCTCTGAAAAACAAAAAGCTGCTCCTCCTTCCCCTTTTGGCTATGGCAACAAACAAATTGGCCGCAATGGCGACGTGGGTTGGGTCGAATACATTCTCTTAAACACTCACCTAGAATCCAACTCCGATGGGTTTCTCTCCATTTTTGGCCAAGACCCACAAAAACTCCGCTCTGCTGTGAACAATTACATATCAGCTGTGAGGAATATGGCGTGTGAAATCCTTGAGTTAATGGCGGAAGGATTGAAGATTCAGCAGAGGAATGTGTTCAGTAAACTGGTGATGGATGAAGAGAGTGACTCTGTTTTTAGGGTGAACCATTATCCGCCATGTCCACAGATTCAAGCCTTGAAAGGGATGAACATGATTGGATTTGGAGAACATACAGACCCACAGATTATATCGGTCTTAAGATCAAATAATACTTCTGGACTTCAAATTTCTCTTGCTGATGGGAATTGGATTTCTGTTCCTCCTGATCAAAACTCTTTTTTCATCAATGTTGGTGACTCTTTACAGGTGATGACTAATGGAAGATTCAAAAGTGTGAAGCATAGGGTATTGACAAACAGCTTGAAGTCAAGAATTTCAATGATATATTTTGGTGGGCCACCATTAAGTGAAAAAATAGCTCCTTTGCCTTCACTTATGAAAGGAGAAGAAAGAAGTTTGTACAAAGAGTTTACTTGGTTTGAGTACAAAAGATCAGCTTACAACTCCAGGTTGGCAGATAACAGGCTTGTTCACTTTGAAAGAATTGCAGCCTCATAA 966 41.1 MASAASSSPAFLSEVPLIDLSSPDAKQLIVKACEELGFFKVVNHGVPMEFISTLESESTNFFSLPLSEKQKAAPPSPFGYGNKQIGRNGDVGWVEYILLNTHLESNSDGFLSIFGQDPQKLRSAVNNYISAVRNMACEILELMAEGLKIQQRNVFSKLVMDEESDSVFRVNHYPPCPQIQALKGMNMIGFGEHTDPQIISVLRSNNTSGLQISLADGNWISVPPDQNSFFINVGDSLQVMTNGRFKSVKHRVLTNSLKSRISMIYFGGPPLSEKIAPLPSLMKGEERSLYKEFTWFEYKRSAYNSRLADNRLVHFERIAAS* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14931474 14932951 + Chy7G138430.1 Chy07g01013 231024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01013 321 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 163 269 IPR005123 -
Chy07g01013 321 SUPERFAMILY Clavaminate synthase-like 12 309 - -
Chy07g01013 321 Pfam non-haem dioxygenase in morphine synthesis N-terminal 15 106 IPR026992 -
Chy07g01013 321 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 318 - -
Chy07g01013 321 PRINTS Isopenicillin N synthase signature 29 46 - -
Chy07g01013 321 PRINTS Isopenicillin N synthase signature 193 214 - -
Chy07g01013 321 PRINTS Isopenicillin N synthase signature 229 255 - -
Chy07g01013 321 Pfam 2OG-Fe(II) oxygenase superfamily 165 267 IPR044861 -
Chy07g01013 321 Gene3D - 2 309 IPR027443 -
Chy07g01013 321 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 1 12 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01013 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - csv:101215820 635.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00144 Chy-Chr2:1062044 Chy07g01013 Chy-Chr7:14931474 6.56E-139 dispersed
Chy04g01176 Chy-Chr4:18067993 Chy07g01013 Chy-Chr7:14931474 1.49E-60 dispersed
Chy07g01013 Chy-Chr7:14931474 Chy01g02035 Chy-Chr1:25189357 3.09E-45 dispersed
Chy07g01013 Chy-Chr7:14931474 Chy01g01778 Chy-Chr1:23421021 7.93E-100 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g898 . . . . . . . . Cmo16g00489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00453 . Car16g00411 Cpe14g00383 . . . . . . . . Cla07g00995 Cam07g1070 Cec07g1142 Cco07g1120 Clacu07g1044 Cmu07g1035 Cre07g1411 . . Chy07g01013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01013 Chy_Chr07 FPKM 22.062456 23.765308 19.741722 20.30302 33.149254 29.031275 32.600811 3.494953 3.427044 3.209539