Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01045 ATGCAGGATCAAGATTCGTGTTCCACCCCAGGTCAAGGGGTATCCATTCCGGAATTTACCTTGACTTCTCCTGATCTAGTTATTTGTGCTGGTTCTCCTGATATTCCAGTAGATAACTACTGTGATTCACCAGAATTCTTGGATATCAAGGGTTGTAAACCTATGGAATCTTCCATGGAGCTTTCCTTTGAAAATAGTTTTTCTGGAATTGAGGTTAAGTACAATCAGAGGACCCCATCTGTTAGATTTTCCAAGTTGTGTGAAACCTATGAACACGAACTTTCTCCAGAATCTTCCTTTGAGTTGGCTCCTCCTCCTCCAGTTACTAATTCTCTGCAATCTGAAGAACTCCTTCAAGCTGTTAGTATCAATTCGGGTTCCTCAAATGATGCTGTGACTTATGATGGGATAAACTATGTGGAAGACAATTGGTACAAGGGTGGTGATACCATTAGGTCTGACGAAATTGAGCATCCTCTATACCAAACAGCTCGTTATGGGAACTTTTGTTACAATCTCTCATCATTGGAACCTGGGAATTATGTTGTTGACCTTCATTTTGCTGAAATTGTATTTACCAATGGTCCTTCTGGTATGAGGGTGTTTGATGTCTATTTGCAAGACCAGAAGGTTGTTTCTGGCCTGGATATATATGCTCGTGTTGGTGGGAATAAACCTCTTATTGTATCCGACCTCAAAATTACTGTAGATGTAAAAGATTTAACCATTAGGTTTGAAGGACTGATGGGTAGGCCAATTGTTTGTGGTCTTTCTGTGAGGAAAGATATTCCTTCAAACATCAAAGAAGTTGAACGGCTCGAAGGTGTGGGATCTTCTCAACTAGAAAACTCAGAGATGTCCAGAGATGGTAGTGAGTTGATAGTAAAAGAGAAGAAGTACATAGAGCTCCAAAAGGATTTCGAGCTCATGAAGAATGAGCTAGCAACAGCAAGGAAAGATGTGGAGGAACTTAAAAAGGAAAACAATCAAAAGGGTAGGGAATGTCAAGAAGCTTGGAAGTCTCTAAATGAGCTACAAAACGAGCTTATGCGCAAGTCAATGCATGTTGGATCTCTTGCTTTTGCCATTGAGGGACAGGTGAAGGAGAAGGGCAGATGGTTTTCTTCGTTGAGGGACCTCACCAGAAAAGTAAAGATTATGAAAATGGAAAACATCAAACTATCGGAGGAGGCGCTTGCATTCAAGAACTGCTTTGTGGATATGAATGAAATGACTTCTAAAATTCAGACAGCGTTTAAACAACAATCAGATTTGCAAGAAAATTTGAAGACTAAATTTGTTGAAGGAGCTAAGGAACGGAAAGAACTCTACAATAAGATGTTGGAGTTGAAAGGAAACATCAGGGTCTTTTGTCGGTGTAGGCCCTTAAATACAGAAGAGATTGCATATGGAGCGTCAATGGTTGTTGATTTTGAGTCAGCTAAAGATGGGGAATTGATTGTTAAATCAAACGGGGCTCCCAGAAGGATCTTTAAATTTGATGCTGTCTTTGGCCCTCAAGCGAATCAAGGAGATGTCTTTGAAGATACTGCGCCATTTGCGGCTTCAGTTCTAGATGGTTACAATGTTTGCATATTTGCATATGGCCAAACTGGAACTGGAAAAACTTTTACAATGGAGGGGACTGAAGGAGCTCGCGGAGTTAATTATAGGATTCTTGAAGAGTTGTTTCGCTTAACGAAAGAGAGGCAGAAGCTACATCGATATAAAGTATCTGTTAGCGTATTGGAAGTGTATAATGAGCAAATACGGGACTTGCTAGTCTCGGGATCTCAATCAGGGAACAGTGCAAAAAGGCTCGAAGTTCGACAAATTAGTGAAGGAATACATCATGTTCCTGGCATGGTTGAGGCCCCTGTCGACAACATGAATGAAGTTTGGGAAGTTTTACAAACTGGCAGTAATGCAAGAGCTGTTGGTTCAACCAATTGTAATGAGCACAGCAGCCGATCCCACTGCATACATTGTGTGATGGTGAAGGGGGAGAATTTGCTAAATGGGGAATGCACTAGCAGCAAATTGTGGTTGGTGGACTTGGCGGGCAGCGAGCGAATTGCCAAAGTAGAAGTACAGGGAGAACGACTCAAAGAAACACAAAATATAAATAGATCTCTTTCCGCACTTGGCGATGTAATATCTGCTCTTGCAACAAAAAGCCCACATGTTCCTTTCAGGAACTCCAAGCTCACTCACTTGCTTCAAGATTCACTAGGGGGAGATTCAAAGACACTCATGTTCGTACAGATCAGTCCCAACGAAAATGACTTGAATGAGACTCTTTGCTCATTGAACTTTGCAAGCAGAGTAAGAGGAATTGAGTTGGGACCTGCAAAGAGACAGCTTGATATGTCTGAATTCCTTAAATGCAAACAGATGACTGAGAAAACAAAACAGGATATGAAGAGTAAAGATCTACAGATAAGAAAAATGGAAGAAACAATTCATGGATTAGACTTGAAGATGAAGGAAAAAGATCAGAAGAACAAAAATCTTCAAGACAAGCTCAAAGAACTTGAAGCTCAACTTCTTGTTGAAAGAAAGTTAGCACGTCAGCATGTCGACGCCAAAATAGCAGAGCAGCAAATGAAAAACGAATTAGAAGATCATAAGTCTGCACCATTGAGGCCACAACTTGCAAGTCGACCATTAGGTAGTCAAAAATATCTACATGGATCATTTAACAACATGCTTGGAAAGGAGCAAATAAATCTCACTCATCCACTAACTGAAAACAATGGCTTCAAACCATCATTTCCCTTTTCTCCAGTGGATGGTGCCACCAAGTCCACTGATTCCGCAGAGAAGGAGAACAATCCAGAGATGGTTGAACGATGTTTTGTGCCACCGAAGAGGACAGGAAGAGCATCTATTTGCACAATGGCCCGACGTGTACCGATGGCCCTGGCTCCTAGGAGAAAGTCCCTAATCCCACTACCAAGCATACCAAGCTCCACTCATCTCCCATCACCCATGTTGACATTAGCCACTGACAAGATAGACGAAGGCAACGACGGATCAGATGATAGTAACTGCTTCCCTGAACAGGCACAATGTGAGAGTCCTAAAGAGATAAAATACGGAGGCAAAAAGTTGAGCAACGTGTTGAGACGAAGCCTTCAAAAGAAGATAAAAATGAAGTCTCCAATGCAACAACACATGAGACGAGGCGGTATCAATGTAGGGATGGAGAAAGTCAGGGTGTCCATCGGAAGTCGAGGAAGGATGGCGGCGCACAGGGTGTTGTTAGGGAATGGTAGGAGAGTAACTAAAGATGATACTCAAAGTAAGAAGGAAAAGGAAAGGGGTTGGAATATGGGAACAACAGTAGGGAGAACTGTTATTTGA 3366 41.8 MQDQDSCSTPGQGVSIPEFTLTSPDLVICAGSPDIPVDNYCDSPEFLDIKGCKPMESSMELSFENSFSGIEVKYNQRTPSVRFSKLCETYEHELSPESSFELAPPPPVTNSLQSEELLQAVSINSGSSNDAVTYDGINYVEDNWYKGGDTIRSDEIEHPLYQTARYGNFCYNLSSLEPGNYVVDLHFAEIVFTNGPSGMRVFDVYLQDQKVVSGLDIYARVGGNKPLIVSDLKITVDVKDLTIRFEGLMGRPIVCGLSVRKDIPSNIKEVERLEGVGSSQLENSEMSRDGSELIVKEKKYIELQKDFELMKNELATARKDVEELKKENNQKGRECQEAWKSLNELQNELMRKSMHVGSLAFAIEGQVKEKGRWFSSLRDLTRKVKIMKMENIKLSEEALAFKNCFVDMNEMTSKIQTAFKQQSDLQENLKTKFVEGAKERKELYNKMLELKGNIRVFCRCRPLNTEEIAYGASMVVDFESAKDGELIVKSNGAPRRIFKFDAVFGPQANQGDVFEDTAPFAASVLDGYNVCIFAYGQTGTGKTFTMEGTEGARGVNYRILEELFRLTKERQKLHRYKVSVSVLEVYNEQIRDLLVSGSQSGNSAKRLEVRQISEGIHHVPGMVEAPVDNMNEVWEVLQTGSNARAVGSTNCNEHSSRSHCIHCVMVKGENLLNGECTSSKLWLVDLAGSERIAKVEVQGERLKETQNINRSLSALGDVISALATKSPHVPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLNETLCSLNFASRVRGIELGPAKRQLDMSEFLKCKQMTEKTKQDMKSKDLQIRKMEETIHGLDLKMKEKDQKNKNLQDKLKELEAQLLVERKLARQHVDAKIAEQQMKNELEDHKSAPLRPQLASRPLGSQKYLHGSFNNMLGKEQINLTHPLTENNGFKPSFPFSPVDGATKSTDSAEKENNPEMVERCFVPPKRTGRASICTMARRVPMALAPRRKSLIPLPSIPSSTHLPSPMLTLATDKIDEGNDGSDDSNCFPEQAQCESPKEIKYGGKKLSNVLRRSLQKKIKMKSPMQQHMRRGGINVGMEKVRVSIGSRGRMAAHRVLLGNGRRVTKDDTQSKKEKERGWNMGTTVGRTVI* 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15387417 15392421 - Chy7G138750.1 Chy07g01045 231056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01045 1121 Gene3D Kinesin motor domain 397 781 IPR036961 -
Chy07g01045 1121 ProSiteProfiles Kinesin motor domain profile. 453 779 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01045 1121 Coils Coil 300 334 - -
Chy07g01045 1121 Coils Coil 814 855 - -
Chy07g01045 1121 SMART kinesin_4 451 787 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01045 1121 Pfam Malectin domain 121 256 IPR021720 -
Chy07g01045 1121 ProSitePatterns Kinesin motor domain signature. 679 690 IPR019821 GO:0003777|GO:0005524|GO:0007018
Chy07g01045 1121 Pfam Kinesin motor domain 459 779 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01045 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 816 IPR027417 -
Chy07g01045 1121 PANTHER KINESIN-LIKE PROTEIN KLP-3 20 1102 - -
Chy07g01045 1121 Coils Coil 377 397 - -
Chy07g01045 1121 Gene3D - 119 263 - -
Chy07g01045 1121 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 20 1102 - -
Chy07g01045 1121 PRINTS Kinesin heavy chain signature 527 548 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01045 1121 PRINTS Kinesin heavy chain signature 729 750 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01045 1121 PRINTS Kinesin heavy chain signature 649 666 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01045 1121 PRINTS Kinesin heavy chain signature 680 698 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01045 1121 CDD KISc_C_terminal 451 781 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01045 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101222343 2175.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00753 Chy-Chr2:4653432 Chy07g01045 Chy-Chr7:15387417 1.97E-67 dispersed
Chy05g01112 Chy-Chr5:15669468 Chy07g01045 Chy-Chr7:15387417 2.75E-171 dispersed
Chy06g02297 Chy-Chr6:26885471 Chy07g01045 Chy-Chr7:15387417 3.40E-77 dispersed
Chy07g01045 Chy-Chr7:15387417 Chy09g01230 Chy-Chr9:14379765 6.01E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01045 Chy_Chr07 FPKM 0.450634 0.490877 0.07628 0.0 1.539304 1.371296 1.668564 0.08633 0.0 0.097529