Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01088 ATGATCAATCCCACCCCTTCATTTCTTTCTAACCTTGTCGTCTTTGGCGATCCCGTCGACTGTCCTCATCATCACCACCACCACCATCATGAAAACCCCGATGAAGATGATCAATCAGTAATAAGTTCCATTTGCGACAACTTTCCCACCGCTCTCGTTCCACTACAAACCACCAACACTTCTGTTTTTTGTGTTGATCAAAACAGTTGTTGCAACTTCACGACGATTCAAGCAGCAGTTGATGCAGTACCAAACTTGAGCATCAAACGGAACATAATTTGGATCAATGCTGGAATTTACTATGAGAAGGTGATGGTACCAAAAACAAAACCAAATGTGACGTTTCAAGGACAAGGGTATACAACAACGGCTATTGTTTGGAATGACACTGCCAATTCTTCCCATGGCACATTCTATAGTGGCTCTGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATTTAAGTTTCATGAATGTGGCGCCAATTCCAGCGCCGGGAGACGTCGGAGCACAGGCGGTGGCGATTAGAATCGGTGGAGACCAAGCGGCTTTTTGGAGCTGCGGATTCTTTGGCGCTCAAGACACTATTCACGACGACCGTGGCCGCCATTACTTCAAAGATTGCTACGTTCAAGGCTCCATCGATTTCATCTTCGGCAACGGAAGATCCTTCTACGAGACTTGCCAGTTGGTTTCGATGGCGAATCCGGTTCCGCAAGGATCGAAGTTTGTGAATGGAGCGGTGACTGCCCACGGCAGAGCCTCCGCTGACGAGAACTCTGGATTTTCTTTTGTAAATTGCAGTATCGGCGGAACTGGCAGAGTGTGGCTCGGCCGCGCGTGGCGGCCGTTCTCTCGTGTCGTCTTTGCTAACACCGTTATGACAGATATCATTGCGCCGGAGGGATGGAATGACTTTAATGACCCTGCAAGGGACCAGACAATCTTCTATGGAGAGTACAACTGCAGTGGAGCAGGAGCCAATATGAGCTCAAGGGCTCCCTATGTTCAAAGGCTTAATGATACTCAAGTTTCCTCTTTCCTCAATTTATCCTTCATTGATGCCGACCAATGGCTTCAACCCTATTCATTGTTTTAA 1101 47.23 MINPTPSFLSNLVVFGDPVDCPHHHHHHHHENPDEDDQSVISSICDNFPTALVPLQTTNTSVFCVDQNSCCNFTTIQAAVDAVPNLSIKRNIIWINAGIYYEKVMVPKTKPNVTFQGQGYTTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNLSFMNVAPIPAPGDVGAQAVAIRIGGDQAAFWSCGFFGAQDTIHDDRGRHYFKDCYVQGSIDFIFGNGRSFYETCQLVSMANPVPQGSKFVNGAVTAHGRASADENSGFSFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIAPEGWNDFNDPARDQTIFYGEYNCSGAGANMSSRAPYVQRLNDTQVSSFLNLSFIDADQWLQPYSLF* 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15822713 15826300 + Chy7G139180.1 Chy07g01088 231099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01088 366 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 22 364 - -
Chy07g01088 366 Pfam Pectinesterase 65 356 IPR000070 GO:0030599|GO:0042545
Chy07g01088 366 ProSitePatterns Pectinesterase signature 2. 211 220 IPR033131 -
Chy07g01088 366 PANTHER PECTINESTERASE 8-RELATED 22 364 - -
Chy07g01088 366 Gene3D - 61 365 IPR012334 -
Chy07g01088 366 SUPERFAMILY Pectin lyase-like 61 363 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01169 Chy-Chr1:13596924 Chy07g01088 Chy-Chr7:15822713 1.52E-79 dispersed
Chy05g00189 Chy-Chr5:1503554 Chy07g01088 Chy-Chr7:15822713 3.45E-79 dispersed
Chy05g00190 Chy-Chr5:1506943 Chy07g01088 Chy-Chr7:15822713 9.70E-79 dispersed
Chy06g00757 Chy-Chr6:5220415 Chy07g01088 Chy-Chr7:15822713 2.77E-72 dispersed
Chy07g01088 Chy-Chr7:15822713 Chy09g01087 Chy-Chr9:13184232 2.48E-81 dispersed
Chy07g01088 Chy-Chr7:15822713 Chy03g01447 Chy-Chr3:17086181 6.24E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01088 - - csv:101220702 738.413