Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01144 ATGGAGAATCTCATCTCTCTTGTTAATAAAATTCAGAGGGCTTGTACGGCGCTTGGTGACCATGGCGAAGCTAGCGCATTGCCTACACTTTGGGACTCCTTGCCGGCTATCGCCGTCGTCGGTGGCCAAGGATTGAGATCTTCTTGTTCTCTCTTTATCGTTTTATCTTTTTGTTTATCGTTTGAAATGGATGGAGATTTTTTACTGCCTGAATCGTTAGTTCGGAGGTTTTTGTTGCTCAATCAAATGTTAAAAATGGAGGATTTCGTGAAAAAGATTGTCTCGTTGTCTGATTTTGCAATCGAGTCTGTTCTGTGGATCCGTGTGATTAGCCGAAAGTTCTGTTCGAGTTCGGGCAAATCTTCAGTGTTAGAAAGCATTGTCGGCAAGGATTTCTTACCTCGTGGATCTGGTATTGTTACTAGGCGTCCTCTTGTCTTGCAACTTCATAAAAGTGACGAAGGAAGCAGAGAGTATGCAGAGTTTCTCCACCTTCCCAGGAAAAAATTTACTGATTTTGTTGCTGTCAGGAAGGAAATTCAAGATGAGACAGATCGAGAGACTGGCCGCTCTAAACAAATTTCCAGTGTCCCAATTCATCTCAGTATATATTCTCCTAATGTTGTAAACTTGACACTTATTGATCTTCCTGGGCTTACAAAAGTAGCTGTTGAGGGCCAACCAGAGAGTATTGTTCAAGAAATTGAAATGATGGTTCGCTCCTATATTGAAAAGCCTAATTGTATTATACTTGCTATTTCACCTGCCAATCAAGATTTGGCTACGTCAGACGCGATTAAAATCTCTCGTGAAGTTGATCCTACTGGGGAGAGAACTCTTGGTGTCTTGACGAAGATTGATCTCATGGATAAGGGAACAGATGCTGTTGATATATTGGAAGGCAAAGCTTACAGGCTGAAGTTTCCTTGGGTTGGTGTTGTGAATCGTTCACAAGCAGACATCAACAAAAATGTTGACATGATTGCAGCTAGGCGTAGGGAGCGTGACTATTTTGCTAGCACTCCAGAATACAAGCACCTCGCCCATAGGATGGGCTCTGAGCATCTAGCAAAGGTCCTTTCAAAGCATCTAGAAACGGTAATCAAGTCCAAAATCCCCGGCATTCAAAACCTTATTAACAAGACCATTTCAGAACTTGAATCCGAACTAAGCCGTCTTGGAAGGCCTGTTGCAAATGATGCTGGGGGAAAACTATACATGATTATGGAGATTTGTCGGGCTTTTGATCAGAATTTTAAAGAGCACCTTGATGGCGTGCGTCCTGGTGGTGATAAAATTTACAATGTCTTTGATGACCAACTTCCTGCTGCGCTGAAGAGGTTGCAGTTTGACAGGCAACTGTCAATGGAAAATGTAAAGAAGCTTATTACTGAAGCTGATGGATATCAACCTCATTTAATAGCTCCTGAACAAGGATATCGTCGTCTTATTGAATCTACTTTAGTTACTATTAGAGGCCCGGCTGAGGCATGTGTTGATGCGGTTCATGCCATATTGAAGGATCTGGTTCACAAAGCGATGGGTGAAACTCTAGAATTAAAGCAGTATCCTGGTCTTAGAGTGGAGGTAGGAAACGCAGCTATTGAGTCCCTGGAAAGAATGAGGGAGCAAAGCAAAAAGGCGTCTCTTCAGCTTGTGGATATGGAGTGTAGCTACCTGACTGTTGATTTCTTCCGGAAGCTTCCTCAAGATATTGAAAAGGGAGGCAACCCTACACATTCAATTTTTGACCGATACAATGACTCATATCTAAGGCGTGTCGGAACAACGGTGCTATCTTATGTCCATATGGTTTGTGCAAGCTTACGGAACTCGATTCCCAAGTCCATTGTTTATTGTCAAGTACGAGAAGCCAAAAGAAGCCTCCTCGATCACTTTTTCACTGATTTGGGAAAACTAGAGCAAAAGCGCCTATCATCATTATTGAACGAGGATCCAGCGATCATGGAACGGCGTACTGCCCTAGCAAAGAGGCTCGAGTTATACAGAAGCGCACAAGCAGAAATCGACACGGTTGCTTGGTCAAAGTAA 2052 42.93 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQGLRSSCSLFIVLSFCLSFEMDGDFLLPESLVRRFLLLNQMLKMEDFVKKIVSLSDFAIESVLWIRVISRKFCSSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKSDEGSREYAEFLHLPRKKFTDFVAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVQEIEMMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTLGVLTKIDLMDKGTDAVDILEGKAYRLKFPWVGVVNRSQADINKNVDMIAARRRERDYFASTPEYKHLAHRMGSEHLAKVLSKHLETVIKSKIPGIQNLINKTISELESELSRLGRPVANDAGGKLYMIMEICRAFDQNFKEHLDGVRPGGDKIYNVFDDQLPAALKRLQFDRQLSMENVKKLITEADGYQPHLIAPEQGYRRLIESTLVTIRGPAEACVDAVHAILKDLVHKAMGETLELKQYPGLRVEVGNAAIESLERMREQSKKASLQLVDMECSYLTVDFFRKLPQDIEKGGNPTHSIFDRYNDSYLRRVGTTVLSYVHMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTDLGKLEQKRLSSLLNEDPAIMERRTALAKRLELYRSAQAEIDTVAWSK* 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16354073 16359598 - Chy7G139740.1 Chy07g01144 231155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01144 683 Pfam Dynamin family 117 286 IPR045063 -
Chy07g01144 683 CDD DLP_1 117 373 IPR001401 GO:0003924|GO:0005525
Chy07g01144 683 Pfam Dynamin GTPase effector domain 587 679 IPR003130 GO:0003924|GO:0005525
Chy07g01144 683 SMART GED_2 586 679 IPR003130 GO:0003924|GO:0005525
Chy07g01144 683 PANTHER DYNAMIN 2 51 IPR022812 -
Chy07g01144 683 PANTHER DYNAMIN 115 682 IPR022812 -
Chy07g01144 683 Pfam Dynamin central region 294 561 IPR000375 -
Chy07g01144 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 381 IPR027417 -
Chy07g01144 683 PANTHER DYNAMIN-LIKE PROTEIN 1E 2 51 - -
Chy07g01144 683 SMART dynamin_3 83 324 IPR001401 GO:0003924|GO:0005525
Chy07g01144 683 Coils Coil 538 558 - -
Chy07g01144 683 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 133 142 IPR019762 -
Chy07g01144 683 Gene3D - 1 382 IPR027417 -
Chy07g01144 683 PANTHER DYNAMIN-LIKE PROTEIN 1E 115 682 - -
Chy07g01144 683 PRINTS Dynamin signature 132 149 IPR022812 -
Chy07g01144 683 PRINTS Dynamin signature 107 125 IPR022812 -
Chy07g01144 683 PRINTS Dynamin signature 255 273 IPR022812 -
Chy07g01144 683 PRINTS Dynamin signature 205 222 IPR022812 -
Chy07g01144 683 PRINTS Dynamin signature 274 290 IPR022812 -
Chy07g01144 683 PRINTS Dynamin signature 297 316 IPR022812 -
Chy07g01144 683 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 104 373 IPR030381 GO:0005525
Chy07g01144 683 ProSiteProfiles GED domain profile. 591 683 IPR020850 -
Chy07g01144 683 Gene3D Dynamin, middle domain 404 659 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01144 - - - csv:101209311 1102.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01144 Chy-Chr7:16354073 Chy09g00831 Chy-Chr9:11002758 1.50E-10 dispersed
Chy07g01144 Chy-Chr7:16354073 Chy06g00310 Chy-Chr6:2072352 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g146 . . Bda06g00152 Bda08g00462 Bpe05g00697 Bpe07g00066 . . . . . . . . . Cpe14g00456 . . . . . . . . Cla07g01094 . Cec07g1258 Cco07g1235 . . Cre07g1519 . . Cone6ag0857 Cone9ag0859 . . . Cme07g01570 . . . . . . Bma05g00879 Bma12g00613 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00667 Chy07g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01144 Chy_Chr07 FPKM 0.797386 2.087178 6.09253 4.143878 7.927098 7.118791 8.397188 5.082368 5.746719 4.065494