Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01166 ATGGCCGATTCCACCACTCTTCAACTTCCCGTTACCGGTGCACCTGCCGGACCCACAAAGAAACCAAGAAACAGCCGGAAGGCTTTGAAGGACAAAAACTCTTCACCGGATGTACCACAATCTCAATCCATGGTTACGAAGGTTACAGCACCATCGGAAGGAGAGATCCTCTCTCAGAATCAATCTTCGGCTAAGAAACCTAAATCCAAAGCCGCAGCAAAGAAGCAGCCGGCGAAACAATCCTTTGATAAAGATTTGCAGGAAATGCAGGATATGCTTCAGCAGTTGAAGCTCGATAAGGAGAAGACTGAGGAGCTGTTGAAAGAGAAAGATGAGATGCTTAAACAGAAGGATGAAGAGCTTAAAACGAGGGATAAAGAACAGGAAAAACTCCAGATCGAATTGAAGAAATTGCAGAAGTTGAAGGAGTTCAAACCTACTATGAACTTCCCTATGATTCAAATTTTGAAAGACAAGGAACAAGATAAGAAAGAGAAGAAGAAATGCGCGGAAAAGAAGAGGCCGGCACCACCTTACATCTTATGGTGCAAAGATCAGTGGAACGAGATCAAGAAGGAGAATCCAGAGGCAGATTTCAAGGAAACCTCAAACATTTTGGGGGCTAAATGGAAGACTATTCCAGCAGAGGAGAAGAAGCCATATGAGGAGAAGTACCAAGCTGAAAAAGAAACCTATTTGCGAATCACTTCTAAAGAGAAGCGTGAGAGTGAGGCCATGAAGTTGTTAGAAGAAGAGCAGAAGCAGAAGACGGCTATGGAGCTGCTTGAGCAGTACCTTCAATTCAAAGAGGAAGCAGAGAAGGAGAACAAGAAGAAGAAAGAGAAAGATCCATTGAAGCCAAAACAGCCCATGTCTGCATTCTTTCTCTTCTCAAATGAGAGGCGTGCATCTCTTGTTGCTGAAAACAAGAATGTTGTTGAGCTAGCAAAGATAGCAGGAGAGGAGTGGAAGAACATGACAGAGGAGCAGAAAGGTCCTTACGAAGAGATGGCAAAGAAGAACAAGGAAAAATACATGCAGGAAATGGAAATTTACGAGCAGAAAAAGGAGGAGGAAGCAGCAATTCTGAAGAAAGAAGAGGAAGAGCAAATGAAGGTTCAGAAACACGAGGCTTTACTATTGCTAAAGAAGAAAGAAAAAACTGAGACTATTATAAAGAAATCGAAGGAGGAGCGCCAGAAGAAGAAGAAGGAAGGGAAAAATCCTGTTGATCCTAACAAGCCTAAGAAGCCCGCATCCTCTTACATCTTGTTCAGTAAAGAAGCAAGGAAAAGTGTAATGGAGGAGAAGCCTGGAGTTAGCAACTCTACAGTGAATGCACTGATATCAGTGAAATGGAAGGAACTAAGTGAAGAGGAGAGAAAAATATGGAATGACAAAGCTGCAGAAGCCATGGAAGGTTACAAGAAGGAAGTTGAGGAATACAACAAAAGTGTTGCTGAAATGAAAGGTGATGATCATCAAGAGAAGAGTTAG 1497 42.55 MADSTTLQLPVTGAPAGPTKKPRNSRKALKDKNSSPDVPQSQSMVTKVTAPSEGEILSQNQSSAKKPKSKAAAKKQPAKQSFDKDLQEMQDMLQQLKLDKEKTEELLKEKDEMLKQKDEELKTRDKEQEKLQIELKKLQKLKEFKPTMNFPMIQILKDKEQDKKEKKKCAEKKRPAPPYILWCKDQWNEIKKENPEADFKETSNILGAKWKTIPAEEKKPYEEKYQAEKETYLRITSKEKRESEAMKLLEEEQKQKTAMELLEQYLQFKEEAEKENKKKKEKDPLKPKQPMSAFFLFSNERRASLVAENKNVVELAKIAGEEWKNMTEEQKGPYEEMAKKNKEKYMQEMEIYEQKKEEEAAILKKEEEEQMKVQKHEALLLLKKKEKTETIIKKSKEERQKKKKEGKNPVDPNKPKKPASSYILFSKEARKSVMEEKPGVSNSTVNALISVKWKELSEEERKIWNDKAAEAMEGYKKEVEEYNKSVAEMKGDDHQEKS* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16547901 16550153 - Chy7G139960.1 Chy07g01166 231177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01166 498 Pfam HMG (high mobility group) box 415 483 IPR009071 -
Chy07g01166 498 Pfam HMG (high mobility group) box 173 234 IPR009071 -
Chy07g01166 498 Pfam HMG (high mobility group) box 287 352 IPR009071 -
Chy07g01166 498 SUPERFAMILY HMG-box 410 490 IPR036910 -
Chy07g01166 498 SUPERFAMILY HMG-box 161 234 IPR036910 -
Chy07g01166 498 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 17 490 IPR044601 GO:0003677
Chy07g01166 498 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 415 483 IPR009071 -
Chy07g01166 498 Coils Coil 385 405 - -
Chy07g01166 498 Coils Coil 335 369 - -
Chy07g01166 498 Coils Coil 79 141 - -
Chy07g01166 498 Coils Coil 465 492 - -
Chy07g01166 498 Coils Coil 258 282 - -
Chy07g01166 498 MobiDBLite consensus disorder prediction 34 67 - -
Chy07g01166 498 MobiDBLite consensus disorder prediction 391 412 - -
Chy07g01166 498 Coils Coil 153 173 - -
Chy07g01166 498 CDD HMG-box 415 480 - -
Chy07g01166 498 SMART hmgende2 286 354 IPR009071 -
Chy07g01166 498 SMART hmgende2 414 484 IPR009071 -
Chy07g01166 498 SMART hmgende2 171 241 IPR009071 -
Chy07g01166 498 MobiDBLite consensus disorder prediction 1 84 - -
Chy07g01166 498 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 172 240 IPR009071 -
Chy07g01166 498 CDD HMGB-UBF_HMG-box 174 234 - -
Chy07g01166 498 MobiDBLite consensus disorder prediction 391 423 - -
Chy07g01166 498 SUPERFAMILY HMG-box 275 360 IPR036910 -
Chy07g01166 498 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 17 490 - -
Chy07g01166 498 CDD HMGB-UBF_HMG-box 290 350 - -
Chy07g01166 498 Gene3D High mobility group box domain 174 233 IPR036910 -
Chy07g01166 498 Gene3D High mobility group box domain 393 496 IPR036910 -
Chy07g01166 498 Gene3D High mobility group box domain 270 365 IPR036910 -
Chy07g01166 498 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 287 353 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01166 K09273 UBTF; upstream-binding transcription factor - csv:101204736 702.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01166 Chy-Chr7:16547901 Chy08g00637 Chy-Chr8:14270732 1.38E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g113 . . . Bda08g00480 . . . . . . . . . . . Cpe14g00470 . . . . . . . . . . . . . . . . . Cone6ag0841 Cone9ag0838 . . . Cme07g01578 . . . . . . Bma05g00859 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00644 Chy07g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013737 1 1 1 1 1 0 2 0 0 1 0 0 0 1 1 0 0 2 2 0 1 1 1 1 1 1 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18326 PF00505 HMG_box 4.80E-17 CL0114 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01166 Chy_Chr07 FPKM 32.315281 34.647041 14.847202 15.232277 7.053807 7.701613 6.894438 0.585522 0.298234 0.0