Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01167 ATGGCTACTGCGCAGAAAGTTCGAGTAGTTCGTTGTCCTAGATGCCAGAATCTCTTGCCTGAACCTTCTGGACTTTCTGTTTATCAGTGTGGTGGATGTGGTATTGTTCTTAAAGCAAAGAGTAAAGTTCTCTTTAATGAGAAAAGGGATTTTGGGAGCAGTGAGAAATATGAGAATTTCTCAGAACAAGGAGGTAGCAGCTTAGGTGGTGTTTCTGACTCTGAGCGGGGAAGTCCAAGCATGGAACCAACTGTAAATGAGAGAGTCATGAGGTCCAGAAGGACTGTCTTCAGCAACAGTCCGATTAGAACAAGTGATAGAGAGGATATAGATGACTATGAGAGAAAAATTGGGAAGGAAACTAAGGGAGTTTGGCCTATGCAGAGGCTTGGAGATAAAGAAGTTGGTTCGGTTGAAGAAACGCATAGTCAATTTTCAGAACAACGTATCGAGAATTGGGTTCGGCGGTATAATACTGAACAAGACATGAATATTTATGATTCTGATACTCCAAGTACAGCACCTTATCGTAATCCTATTGGAGCAGCAAGAACCCGAGCTACTTTTGAGCATCATAGAGTTGAAAGAGATGCATTCACAGGGTATTCTGGAAACTCTATGGCTGGTGCTCATGGAAAAGGAGCTCCAAATTTCCGCTATCCTCGTGACAGACCTTCAAGTTCTAACTTGGATTTGTTCTATGGCCATCCCGAGCCTAATCGGAACTATGAAGGTCCTATAGAAGGCTTTGACCCAAATCGAGCTGAACTCCTAAGAAGGTTGGATGAGTTGAAAGCCGAAATTATGAAGTCCTGTGATGTGGGAGATAGACCAAGAGTTGTTGCTGATAGAGCTCCAGTTGACCCATATTACAGTCGAGCTGGTTACAATGTCCCAATGCGATCTTCGACAAAGAGCCCACAGCATATCCACGGCCCTCAGTACTTCGGTCGGGGAAGTGGAACCTTTCCAGCAACAGGTCAGCATCAAAGAAATGGTGAGGATTTCTTACATCCTCCGAGGCATGTTGTGAAAGATATGCCATTGTACGAGGATCAGTTTCAGGAGCAAATGATAAGGAAAACTAACCAACATCCAGCCCATCAGTATCCTCCCCGACAACACTATCCAGAAAGGGTCATGGATTTCAAACAAGATCCTCTTTCTCCATCGCATGACGAAGATGTGTTTTTTCACCATCCTGCCTGCCCTTGTTCACCATGCGGCAAAAGGAACAGGCAAGGGCCACCAAATTCTCCTGCAAGTAACGTAAGTAATCCGAAAGAGCCAATAAAATCTAGCACATATCATAATGAAACTCCTGTTACAGTTGGACTCATGGCTTCCAATCTGCTGCGTGCTGGCCGTTTTCCATCTCAAGATACACTTCCACACTCTAGACAACCTAGCGAGCTTGATTCAGAGATTGATGGTTTTGGTCTTGTTCAACCAAGAACGTCTGCAGTTTTGCAGAGAAATGGAAAATCTCGAGATGCAATCGCTGGCGGTGCTCCATTCATTGTATGTTCTAGTTGCTTGGAGTTGCTGAAATTGCCAAGAAAACTTTACAAGTTGGAGGTGGATTGGCAGAAACTACAGTGTGGTGCTTGTTCGGTTGTCATTATCGTAAAAGTAGAAAACAGAAAGCTTGTTATTAGCGTTCCAGCAGAAACCAAGCCTACTGAAGTTTCTCCTAATGATAGTTCCCCCAAAAGCGTTGTCAATGCTACCAGCTCCGTAGAAAGTTCTGATAATTCTAGTCACAAAGTGATCGATACCGACCACAACAAGCCCTCTGACGACCAGGATTCAAATTGCGCTGAACCACAGGAGGAGGTAACTTCATCTCCCATTTCTTCCAAGGAAAAAGAGTCCCCAACTATTAATTGTGATCCCAAAAATCTCTCTGACTCTGATGACCTGCCTTTGAAAGATACACCATCTGTAATAAGTTCCGTGGAGAATTCTGACAACCCTTCTCATGATAAACCTAGCGAACACAGAGAAGGAACTGAAAATAAGCAGAAAGTTATGGTAGATGATGTCACCGAACCAAGTGAGTTAGACGTCTCGTTTGATGATTATTCAAACATTCATGTTTCTCATGATTCTGTGGAAATAAACAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAAGCAAGATCAAAAGCAATCAAGAATCTGAAACCTTCTTTGTGGGTCTCAGTAGAAACAACTTAAGAGATTTTTCAAGATCAAGTGAAATTACGGATAATGGAAGGCCTACTGTTTCAGTTAATGGCCAGCCTTTACCAGCTCATATAGTTAAAAAGGCTGAAAAGCATGCTGGACCCATTCTTCCTGGAGATTATTGGTATGATTACCAAGCTGGATTCTGGGGTGTAATGGGCCATCCATGTCTTGGTATTATTCCTCCATTTATCGACGAGTTCACCTATCCAATGTCGAGGAACTGTGCTGCTGGAAACACTGGAATCTTTGTCAATGGGAGAGAGCTTCATAAAAGGGATTTGGAGTTGCTTTCTAGCAGAGGGTTGCCTACTACTACAAATAAATTGTATAGAATCGACATTTCGGGAAGAGTTATAGATGAAGACTCTGGAAAAGAGTTGTATAACCTGGGAAAACTCGCCCCAACCTGTGTTTTCAACTACCGTATTTTCAATTTATTCCTCATATTTGAGAAAACAAAATATACTCTTCCATTGCTACCTCTGAGTATTGGATTGTCATTAAAATTAAGACCTTAA 2769 42.29 MATAQKVRVVRCPRCQNLLPEPSGLSVYQCGGCGIVLKAKSKVLFNEKRDFGSSEKYENFSEQGGSSLGGVSDSERGSPSMEPTVNERVMRSRRTVFSNSPIRTSDREDIDDYERKIGKETKGVWPMQRLGDKEVGSVEETHSQFSEQRIENWVRRYNTEQDMNIYDSDTPSTAPYRNPIGAARTRATFEHHRVERDAFTGYSGNSMAGAHGKGAPNFRYPRDRPSSSNLDLFYGHPEPNRNYEGPIEGFDPNRAELLRRLDELKAEIMKSCDVGDRPRVVADRAPVDPYYSRAGYNVPMRSSTKSPQHIHGPQYFGRGSGTFPATGQHQRNGEDFLHPPRHVVKDMPLYEDQFQEQMIRKTNQHPAHQYPPRQHYPERVMDFKQDPLSPSHDEDVFFHHPACPCSPCGKRNRQGPPNSPASNVSNPKEPIKSSTYHNETPVTVGLMASNLLRAGRFPSQDTLPHSRQPSELDSEIDGFGLVQPRTSAVLQRNGKSRDAIAGGAPFIVCSSCLELLKLPRKLYKLEVDWQKLQCGACSVVIIVKVENRKLVISVPAETKPTEVSPNDSSPKSVVNATSSVESSDNSSHKVIDTDHNKPSDDQDSNCAEPQEEVTSSPISSKEKESPTINCDPKNLSDSDDLPLKDTPSVISSVENSDNPSHDKPSEHREGTENKQKVMVDDVTEPSELDVSFDDYSNIHVSHDSVEINKEEEEEEEEEEEEEEDQSKIKSNQESETFFVGLSRNNLRDFSRSSEITDNGRPTVSVNGQPLPAHIVKKAEKHAGPILPGDYWYDYQAGFWGVMGHPCLGIIPPFIDEFTYPMSRNCAAGNTGIFVNGRELHKRDLELLSSRGLPTTTNKLYRIDISGRVIDEDSGKELYNLGKLAPTCVFNYRIFNLFLIFEKTKYTLPLLPLSIGLSLKLRP* 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16550660 16556209 - Chy7G139970.1 Chy07g01167 231178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01167 922 Coils Coil 700 732 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 57 81 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 409 439 - -
Chy07g01167 922 Pfam Probable zinc-ribbon domain 501 544 IPR021480 -
Chy07g01167 922 MobiDBLite consensus disorder prediction 412 439 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 55 90 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 200 220 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 608 634 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 708 724 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 457 478 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 559 586 - -
Chy07g01167 922 PANTHER EXTRA-LARGE G-PROTEIN-LIKE 1 886 IPR040244 GO:1900150
Chy07g01167 922 MobiDBLite consensus disorder prediction 587 604 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 558 734 - -
Chy07g01167 922 PANTHER EXTRA-LARGE G-PROTEIN-LIKE 1 886 - -
Chy07g01167 922 MobiDBLite consensus disorder prediction 659 683 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01167 - - - csv:101207125 1720.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00947 Chy-Chr2:6254119 Chy07g01167 Chy-Chr7:16550660 1.39E-10 dispersed
Chy03g00235 Chy-Chr3:2224697 Chy07g01167 Chy-Chr7:16550660 2.29E-07 dispersed
Chy07g01167 Chy-Chr7:16550660 Chy11g00419 Chy-Chr11:4026944 3.74E-09 dispersed
Chy06g00115 Chy-Chr6:748635 Chy07g01167 Chy-Chr7:16550660 1.72E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g110 Blo02g01141 . . . Bpe05g00682 . . . Cmo06g01054 . . . . . . Cpe14g00471 . . . . . . . . Cla07g01414 Cam07g1515 Cec07g1611 Cco07g1571 Clacu07g1503 Cmu07g1473 Cre07g1850 . . Cone6ag0840 Cone9ag0837 . . . Cme07g01579 . . . . . . Bma05g00858 . . . . . Cma16g00555 Car06g00867 . . . . . . . . . . . . . . . . . . Csa04g00643 Chy07g01167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004376 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 5 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01167 Chy_Chr07 FPKM 16.777779 19.968803 16.32637 13.657686 30.04155 26.651085 35.383221 37.020893 37.650433 42.000069