Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01168 ATGACAAAGCACCGGTTCAGGGATTCTATAAAGTCTCTATTTGGGAGTCACCTTGATCCAGAAACAGAAGAACGGCTCAAAGGGAGTAAATCAGATGTTGAGGACAAGGTGAATAAAATAAAAAAACTCATAAAAGATGAAGATCTAGGAATAAAAGACCACAACCAATCAGAAAATCGCGGCAAACAGTCCGTTGATGAATTAATTGATGATTTCCTTAAAGATTACCAGGCACTCTATGAACAATACGACAGTTTGGCTGGAGAGTTGAGAAGAAAATTTCAAAAAAGAAGGGAAAAGGAAAACTCTTCATCTAGCTCATCTGACTCGGATTCAGATGATTCAAATGGTTCTTCAAAGAAAAAGGTCAGCAAAGATGATCGAGGGTTGGAGAAAGGATTCCAAGAAGTTGGTGAAATCAAGAAGGAACTTGAAGTAGCACTTTCAGAAATAGCAGACTTAAAAAGGATATTGGCTACTACAATTAAAGAACACGAATCTCTAAATTCAGAACATCTGACAGCTTTAAACAGGATACAAGAAGCAGATAGAATTATTAGAGATTTGAAGGTTGAATCTGAGACTTGGGATGCTCAGAAGTCTAAATTTCAGCTTGAAATTGAAGAACTGAATCTGAGGCTGAGTAATGCAGGTAAGATTGAAGCTGAGTTGATCGAGAGATTAAATGGTATGGAAACAGAGAGGAATAGTTTCATTGAAGAAAATGAGACTGCAAGGAGGAGGATTGAAGAGGGGGGGAAAACTATAGAGGAATTAAAGACTTTGGCTGATCAGTTGAAGGAGAAGTTGTCAGCCACAACGGAAGAAAAGGAGACTCTAAACTTAAAACACTTGGAAGCGTTAAACAATATACAAGAAGTAGAAAAGGTCATAGGAGTCCTGAGGGTTGAGGCTGAAGCATTGGGTCTTGAAAAATCTAAATTTCTGGTCGATATTGAAGACCTGAGTCAGAAGTTGAGTGCTGCTGGCGAAATTCAATCTGAATTGAAGGGGAGACTTAAAGATATTGAAATAGAGAAGGAAACCTTGACCGAGGAGAAGGAGACTGCATGGAGGAAAATTGAGGCGGGGGATAAAATTGTAGAAGAATTAAATGCCACAGTTGATTCGTTGAAGAGGCAGTTAACAACTACAATTGAAGAAAAGGAAGCTCTGAACTTTCAGCACTTGGAAACTTTAAGTAGGGCACAAGAAGCAGATACTTTCACAAGAGATCTGAAAGTTGAATCAGAAACCTGGAGTGTTGAAAAATCTAAATTGCTCCTTGAGATTGAAGATCTGAATCAGAAGTTGGATGCTGCTGGAAAATTGGAAGCACAATTGAATGAGAAATTAAAAGTTGTTGGATTAGAATATGATAACTTGATCAAGGAAAATGAAGCTGCAAATAGGACGATTGAAGAAGGACAAAAAATTATCAAAGAACTGAATATCATGACTGATCAGGTGAAGAGGCAGTTGGCAGCTACGATTGAAGAAAAGGAAGTTCTGAACTTGGATCATGCGACAGCTTTAAGCAAGATTACTGAGGCTGATCAGATTATAGGAGATATGAAGACACAATCTGAAACATGGGCTGTTGAAAAAACTGATCTTCTGTACATGATTGAAGAGATGAATCAAAGGATGAGCGATGCTATTAAGATAGAAGCAGAACTCCGTGGAAGATTGAAAGATATTGAAATTGAGAGAGATGGGTTGATCAAGGAAAAGGAGATTGCATGGAAGGAGATTGAACAAGGTAAACAAGTTAGAGAAGAATTAAACGCCACTATTGATCAACTGAACAGCCAATTGACTATAACAGTAGAAGAAAAGAAAGCTCTCAGCTTAGAACATGTGATGGCCTTAAGTAAGCTTCAAGAAGCAAATAACATCATAGAAGATTTTAAAGTTGACGCAGATAGTTGGGACCTGGAAAAATCTAAGCTGTTACTTCAAGTTGAAGGGTTGAATCAGAGACTGAACCAGGCTTCTAAGTTAGAAACAGAACTTAATGAAAGATTGAACGTTGTGGAAATTGAGAAAGTCAACTTGATAAAAGAAAGGGAGACTGCTTGGGAGAGGATTGAAGAGGGAGAGAAGATTATAAAGGATTTAAGTGAGATTGGTGATCGACTAAAAGAGGAAAAGATCACCATTTCCCAAGAATTGGAAACACTTCGAGGAGAAGTTTCTTTCTTGAAGCAGCAGATTCAGTCTACTGAACAGCAGGCTGCAAAATTATCGCATTCTCTAGGAGCATCTGAGGGAGAAAATAGATTATTGAACTTGAAAATTGTAGAGATCTCGAGTGAGATTCAATTGGCTCAACAGACAAACCAAGAACTTGTGTCTCAGTTGCAACTGTTGAAGGAAGATTTGGGCGTGAGGGAAACAGAACGTTCTACTCTTGTTGAGAAGCATGAGACACATGTGAATGAATCGTTAACTCGAGTAAATATGCTAGAAGCTCAAGTTACACGGTTGGAAACAGAAGTGGAGTTATTGCAATCACGTGAAAAAGATTTGTCTCAAGAATTGGAGATAAAAACAGCTGAAGCCAAACAACTGGGAGAGGAAAATATTGGACTACAAGCCCGAGCTTCAGAGATTGAAGTATTATTTAGGGAGAGAGAAAATGAACTTTCAATTCTCAGAAAAAAACTTGAAGACAGCGAGAATCGATCATCATCTAACACAGCAAATTTGACTCTGGAGATCAACCGCTTACTAGAAGAGATTAATTCCTTACATTCTCAAAAAGGTGAACTAGAAGAGCGGATGATATGCAGGAATGAAGAAGCTTCATTGCAAGTCAAGGGCCTGGCAGATCAGGTGGATACATTGCAGCAACAGTTGGAAGTCCAACAGAGCCAAAAAGTTGAATTGGAGTTGCAACTTGAGAGGACAACTCAGACAATTTCAGAATATACAATACAGATACAAAAGTTTAAGGAGGAATTAGAAGACAAGATTTCGGATCTACAGAGACTAGTGAAAGAGAAAGAAGATTTAATAGTGCGAATCAAGGATCTTGAATCAGCATTTGACTCCTTATGCAATGAAAAGCACGAACTTGAGGAGAAACTTAAAAGTCAGATGGATGGGAATAGTCAACTCCGGGAGGAAAAATTTGAGCTGGAGAAGAAATTTTTTGAATTAGAAAGTAACTTGTCAAACAGAGGAGTAGAGCTTGCTACTCTCCATGAGAAACACAGAAATGGAGAAGCTGAAGCCTCGAGCCAAAAACTAATTTTAGTTGCTCAGGTTGAAAATCTGAAAGAGAAGTTAAATTCTTTGCAGAATGAAAAAAGTGAATTTGAGTTGCGGGTTGAAAAGGAGAAACAAGAACTCTTGGATACCTTAACTCTACTGGAAAAGGAGAAAGTTGAGTTATTGAGTTCAATTGGTGATCATCAAAGAAGTTTGAAGGAACACAAGGATGCATATGAAAAGCTAAATGATGAGCATAAACTGCTTGAAGATCAATTTCGAGAATGTAAGCTAAAGCTTGATAATGCAGAAGTGAAGATGGCAGAAATGGCTCAAGAATTTCATAATGACATCAGATCAAAGGACCAAGTGAAAGATGACCTGGAGCTAATGACTGAGGATCTAAAACGAGACCTGGAAGTAAAACATGATGAGATAAATAGCCTGGTTGAAAATGTTCGCACAATTGAGGTCAAGCTCCGGTTATCAAACCAAAAGCTTCGTGTTACAGAACAATTATTAACTGAAAAGGAAGAGATATTTCGAAAAGCTGAATTGAAGTATCAAGAGCAACAGAGACTGCTTGAAGAACGAATTCATGGACTTTCTGCAACCATTGTTGCCAATAACGAAGCGCACCAAAGGGCGATATCTACTGTTTCAGAAAACATTAACAGTAACCTCTCCCAACTGGAATGTGTCATCAGGAAGTTCATATTGGACTATGCAAAGTATGAGAAGTGTGTCAATGGGACATCCCACGATCTACAGCTTGCAAAGAGTTGGGTCTCAAAAGCTGTTCAAGAAACAAATGGCCTAAAGAAAGAGGTGGCAAACCTTGGCAAACAACTTCAAGATAAGAAAGAAAGAGAATCAATACTTGTAGAACAAGTTGAGAAATTGGAGACAAAGGTCAACAAGGAAGGATCTGAGAAGGATGGATTGGTTCAAGCAATCCACCAACTTGAAAAGAGACAGAGAGAATTAGAGAAGATGATGGAAGAGAAGAATGAAGGTATGCTGGGTCTGAAAGAGGAGAAAAAAGAAGCGATAAGGCAACTTTGCATGTTGATCGAGTATCACCGTAACCGTTATGATTTTCTCAAAGATGAGGTCTTAAAGCTGAATGTTAAAGGAGGCCAGAGTGTAAGATAG 4371 38.37 MTKHRFRDSIKSLFGSHLDPETEERLKGSKSDVEDKVNKIKKLIKDEDLGIKDHNQSENRGKQSVDELIDDFLKDYQALYEQYDSLAGELRRKFQKRREKENSSSSSSDSDSDDSNGSSKKKVSKDDRGLEKGFQEVGEIKKELEVALSEIADLKRILATTIKEHESLNSEHLTALNRIQEADRIIRDLKVESETWDAQKSKFQLEIEELNLRLSNAGKIEAELIERLNGMETERNSFIEENETARRRIEEGGKTIEELKTLADQLKEKLSATTEEKETLNLKHLEALNNIQEVEKVIGVLRVEAEALGLEKSKFLVDIEDLSQKLSAAGEIQSELKGRLKDIEIEKETLTEEKETAWRKIEAGDKIVEELNATVDSLKRQLTTTIEEKEALNFQHLETLSRAQEADTFTRDLKVESETWSVEKSKLLLEIEDLNQKLDAAGKLEAQLNEKLKVVGLEYDNLIKENEAANRTIEEGQKIIKELNIMTDQVKRQLAATIEEKEVLNLDHATALSKITEADQIIGDMKTQSETWAVEKTDLLYMIEEMNQRMSDAIKIEAELRGRLKDIEIERDGLIKEKEIAWKEIEQGKQVREELNATIDQLNSQLTITVEEKKALSLEHVMALSKLQEANNIIEDFKVDADSWDLEKSKLLLQVEGLNQRLNQASKLETELNERLNVVEIEKVNLIKERETAWERIEEGEKIIKDLSEIGDRLKEEKITISQELETLRGEVSFLKQQIQSTEQQAAKLSHSLGASEGENRLLNLKIVEISSEIQLAQQTNQELVSQLQLLKEDLGVRETERSTLVEKHETHVNESLTRVNMLEAQVTRLETEVELLQSREKDLSQELEIKTAEAKQLGEENIGLQARASEIEVLFRERENELSILRKKLEDSENRSSSNTANLTLEINRLLEEINSLHSQKGELEERMICRNEEASLQVKGLADQVDTLQQQLEVQQSQKVELELQLERTTQTISEYTIQIQKFKEELEDKISDLQRLVKEKEDLIVRIKDLESAFDSLCNEKHELEEKLKSQMDGNSQLREEKFELEKKFFELESNLSNRGVELATLHEKHRNGEAEASSQKLILVAQVENLKEKLNSLQNEKSEFELRVEKEKQELLDTLTLLEKEKVELLSSIGDHQRSLKEHKDAYEKLNDEHKLLEDQFRECKLKLDNAEVKMAEMAQEFHNDIRSKDQVKDDLELMTEDLKRDLEVKHDEINSLVENVRTIEVKLRLSNQKLRVTEQLLTEKEEIFRKAELKYQEQQRLLEERIHGLSATIVANNEAHQRAISTVSENINSNLSQLECVIRKFILDYAKYEKCVNGTSHDLQLAKSWVSKAVQETNGLKKEVANLGKQLQDKKERESILVEQVEKLETKVNKEGSEKDGLVQAIHQLEKRQRELEKMMEEKNEGMLGLKEEKKEAIRQLCMLIEYHRNRYDFLKDEVLKLNVKGGQSVR* 1457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16559411 16563885 - Chy7G139980.1 Chy07g01168 231179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01168 1456 Coils Coil 901 928 - -
Chy07g01168 1456 Coils Coil 697 717 - -
Chy07g01168 1456 Coils Coil 1342 1376 - -
Chy07g01168 1456 MobiDBLite consensus disorder prediction 45 64 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 265 380 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 489 604 - -
Chy07g01168 1456 Coils Coil 361 388 - -
Chy07g01168 1456 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779
Chy07g01168 1456 Coils Coil 228 283 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 1 268 - -
Chy07g01168 1456 Coils Coil 933 1058 - -
Chy07g01168 1456 Coils Coil 813 861 - -
Chy07g01168 1456 Coils Coil 459 500 - -
Chy07g01168 1456 Coils Coil 1246 1266 - -
Chy07g01168 1456 Coils Coil 424 451 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 489 604 - -
Chy07g01168 1456 Coils Coil 648 682 - -
Chy07g01168 1456 MobiDBLite consensus disorder prediction 114 128 - -
Chy07g01168 1456 Coils Coil 1384 1425 - -
Chy07g01168 1456 Coils Coil 1137 1185 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 372 492 - -
Chy07g01168 1456 Coils Coil 73 93 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 265 380 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 596 1454 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 372 492 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 1 268 - -
Chy07g01168 1456 PANTHER COP1-INTERACTIVE PROTEIN 1 596 1454 - -
Chy07g01168 1456 Coils Coil 137 171 - -
Chy07g01168 1456 Coils Coil 557 577 - -
Chy07g01168 1456 Coils Coil 767 794 - -
Chy07g01168 1456 Pfam KIP1-like protein 14 84 IPR011684 GO:0003779
Chy07g01168 1456 Coils Coil 333 353 - -
Chy07g01168 1456 Coils Coil 876 896 - -
Chy07g01168 1456 Coils Coil 725 752 - -
Chy07g01168 1456 Coils Coil 1084 1129 - -
Chy07g01168 1456 Coils Coil 585 619 - -
Chy07g01168 1456 MobiDBLite consensus disorder prediction 94 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01168 - - - csv:101204981 2590.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01168 Chy-Chr7:16559411 Chy07g01169 Chy-Chr7:16572587 4.74E-06 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g108 . . Bda06g00139 Bda08g00482 . Bpe07g00078 . . . Cmo16g00608 . . . . . Cpe14g00472 . . . . . . . . Cla07g01412 Cam07g1514 Cec07g1610 Cco07g1570 Clacu07g1502 Cmu07g1472 Cre07g1849 . . Cone6ag0838 . . . . Cme07g01580 . . . . . . Bma05g00855 Bma12g00049 . . . . Cma16g00559 . . . . . . . . . . . . . . . . . . . Csa04g00641 Chy07g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001955 2 3 1 4 1 2 2 2 2 2 1 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 5 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01168 Chy_Chr07 FPKM 29.293818 30.768873 37.884956 36.413944 36.144321 37.849171 38.534111 36.521339 35.857399 35.380848