Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01193 ATGGAGCAGAAGGGTTTGTTGCTGTCGGCCTTGAGTGTGGGAGTCGGAGTTGGGGTAGGGCTCGGACTAGCCACTGGACAAAGCGTCAAGCAATGGTCCTCCTCTCATTCTTCATCAAATCTAATCACCGCTGATAAATTGGAACAAGAAATGCTTAAACACATTGTTGATGGCCGTGAAAGCAAAGTCACTTTTGATGATTTCCCTTATTATCTCAGTGAACAAACGCGAGTTCTATTGACAAGTGCTGCATATGTGCATTTGAAACATGCTGAAGTTTCTAAGTTCACTCGAAACCTTTCTCCAGCGAGTCGAGCCATCTTACTCTCCGGACCTGCTGAACTCTACCAACAAATGCTTGCCAAGGCATTGGCTCACTATTTTGAGGCTAAACTGTTGCTTTTAGATATAACTGACTTTTCCCTAAAGATTCAGAGCAAATATGGTACTTCAGTCAGGGAATCTTGTTTTAAAAGGTCTACTTCAGAGTCAACATTGGAGAGATTATCTGGCTTATTTGGATCATTTTCAATGCTTCCATCCAGGGAAGAACAAAAAATAGGTTCATTGCGAAGGCAACGTAGTGGTGTGGAACTTGCATCGTGGGGAAACGAAGGATCTTCCATTCTTCCAAAACTTCGAAGAAATGCCTCGGCTGCTGCTAACATTAATAACCTTGCTTCACAATGCAATGTTGACAAACCGGCTTCCCTTAAGCACATGAGCAGCTGGGCTTTTGAGGAGAAACTTCTTATACAGTCTTTGTATAAGGTTGTTCTATACGTGTCGAAAGCAAATCCCGTTGTTTTATATCTTCGTGATGTAGATAGGTTTTTATCCAAGTCAAATAGGGTGTATAACTTGTTCCAGAAAATGCTACAAAAATTGTCTGGATCAATTTTGATTCTTGGTTCGCGTACTATTGATTCGAGGAATGATTATATGGAGGTGGATGAGAGGCTCTCTGCTCTTTTTCCTTATAATATTGAGATCAGACCACCCGAAGATGAATCTCATCATGTCAGTTGGAAGTCTCAATTGGAAGAGGATATGAAGTCGATCAAGGTTCAGGATAACCGAAACCATATCATGGAAGTTCTTTCAGATAATGATCTTGACTGTGACGATCTCGATTCGATCTGTGTTGGTGATACCTTGGCTCTCAGTAACTACATAGAAGAGATTGTGGTGTCTGCAATTTCTTATCATCTAATGAACAGCAAGGACCCTGAATACAGAAACGGAAAACTGATTATTTCGAGCAAGAGTTTGTCCCATGGACTGGGCATATTCCAGGCAGGAAAATCCACTAGCAAAAATAGTGTACAGCTTGAAGCACAAACTGGAGCTTCAAAGGACTCGGGAGCAGTGAAATCCGAAGCAAAAGCTGATACCGCAGCTGCTGAAATCAGAAGTGAAACAGCACCTGTAGCTGTGGCAAAAACCGATGGAGAGACGGCTGCTCCAGCTGTAAAAGCCCCAGAAGTTCCACCAGATAATGAGTTTGAGAAACGCATTAGGCCAGAGGTCATACCTGCGAATGAGATTGGTGTTACATTTTCTGATATTGGTGCGATGGAGGAAATAAAAGATTCTCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCGGATTTATTTCTTGGAGGGCTTTTGAAGCCTTGCAGAGGCATATTGTTGTTTGGACCTCCTGGAACTGGAAAGACTATGTTAGCTAAGGCCATAGCAAAAGAAGCTGGAGCAAGCTTCATTAATGTATCAATGTCTACCATAACTTCCAAATGGTTTGGCGAAGACGAGAAGAATGTTCGGGCTTTATTCACACTGGCAGCTAAAGTCTCTCCCACCATCATATTTGTAGACGAGGTAGATAGTATGCTTGGGCAGCGAACAAGAGTTGGTGAGCATGAGGCAATGAGGAAGATAAAGAATGAGTTCATGTCTCATTGGGATGGACTCTTGACGAAGCCAGGGGAGCGTGTACTTGTTCTTGCAGCAACAAATAGGCCATTTGACCTCGATGAGGCCATCATACGGCGTTTTGAGAGAAGAATAATGGTGGGGTTGCCATCAGCAGAAAATAGAGAAATGATATTGACAACTCTCTTGGGGAAAGAAAAGGTGGAAGAAGGGCTAGACATGAAGGAGCTGGCCACAATGACAGAAGGGTATAGTGGAAGTGATCTCAAGAACTTCTGTATGACGGCTGCATATCGACCTGTTCGAGAACTGATACAGCAAGAAAGACTAAAGGATGCGGAGAAAAAACGAAGAGCTGCTGAAGGACAGAATAAGACAGGGGATGGAGCTGGAGAAAGCAAAGAAGAAAGAGTAATCACCCTCAGGGCACTAAATATGGAAGATTTCAAACTAGCAAAAAATCAGGTTGCAGCAAGTTTTGCAGCAGAAGGAGCAATGATGAGTGAATTGAGGCAATGGAATGAGTTATATGGGGAAGGAGGATCTAGAAAGAAGCAACAGTTAACTTATTTCCTGTGA 2499 42.82 MEQKGLLLSALSVGVGVGVGLGLATGQSVKQWSSSHSSSNLITADKLEQEMLKHIVDGRESKVTFDDFPYYLSEQTRVLLTSAAYVHLKHAEVSKFTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVRESCFKRSTSESTLERLSGLFGSFSMLPSREEQKIGSLRRQRSGVELASWGNEGSSILPKLRRNASAAANINNLASQCNVDKPASLKHMSSWAFEEKLLIQSLYKVVLYVSKANPVVLYLRDVDRFLSKSNRVYNLFQKMLQKLSGSILILGSRTIDSRNDYMEVDERLSALFPYNIEIRPPEDESHHVSWKSQLEEDMKSIKVQDNRNHIMEVLSDNDLDCDDLDSICVGDTLALSNYIEEIVVSAISYHLMNSKDPEYRNGKLIISSKSLSHGLGIFQAGKSTSKNSVQLEAQTGASKDSGAVKSEAKADTAAAEIRSETAPVAVAKTDGETAAPAVKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGAMEEIKDSLQELVMLPLRRPDLFLGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTKPGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPSAENREMILTTLLGKEKVEEGLDMKELATMTEGYSGSDLKNFCMTAAYRPVRELIQQERLKDAEKKRRAAEGQNKTGDGAGESKEERVITLRALNMEDFKLAKNQVAASFAAEGAMMSELRQWNELYGEGGSRKKQQLTYFL* 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16782405 16787811 + Chy7G140230.1 Chy07g01193 231204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01193 832 Gene3D - 690 794 - -
Chy07g01193 832 ProSitePatterns AAA-protein family signature. 661 680 IPR003960 GO:0005524|GO:0016887
Chy07g01193 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 518 755 IPR027417 -
Chy07g01193 832 Gene3D - 517 801 IPR027417 -
Chy07g01193 832 MobiDBLite consensus disorder prediction 750 775 - -
Chy07g01193 832 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 832 - -
Chy07g01193 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 350 IPR027417 -
Chy07g01193 832 Pfam AAA+ lid domain 712 752 IPR041569 -
Chy07g01193 832 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 832 - -
Chy07g01193 832 SMART AAA_5 554 691 IPR003593 -
Chy07g01193 832 CDD AAA 524 689 - -
Chy07g01193 832 Pfam ATPase family associated with various cellular activities (AAA) 558 688 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01193 - - - csv:101213686 1518.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01678 Chy-Chr1:22689822 Chy07g01193 Chy-Chr7:16782405 4.11E-12 transposed
Chy01g01811 Chy-Chr1:23643593 Chy07g01193 Chy-Chr7:16782405 3.09E-10 transposed
Chy01g02036 Chy-Chr1:25201719 Chy07g01193 Chy-Chr7:16782405 3.49E-61 transposed
Chy02g00143 Chy-Chr2:1047285 Chy07g01193 Chy-Chr7:16782405 5.76E-62 transposed
Chy06g00226 Chy-Chr6:1476402 Chy07g01193 Chy-Chr7:16782405 7.45E-67 transposed
Chy06g01176 Chy-Chr6:10436979 Chy07g01193 Chy-Chr7:16782405 2.39E-85 transposed
Chy09g01447 Chy-Chr9:16012514 Chy07g01193 Chy-Chr7:16782405 1.15E-85 transposed
Chy12g01173 Chy-Chr12:16594668 Chy07g01193 Chy-Chr7:16782405 5.71E-23 transposed
Chy07g01193 Chy-Chr7:16782405 Chy09g01399 Chy-Chr9:15691286 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01193 Chy_Chr07 FPKM 0.0 1.354685 0.197485 1.241331 0.226755 0.0 0.507313 0.0 0.601831 0.0