Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01198 ATGAAGTGCCAGACCGTAGCGTGCATATGGTCCGGCACGCCTCTGTCGCACAGAGTCACCGCCACAGCCGTGCTGAGCCAACCTCCGACTCTCTACACCGGCGGATCTGATGGCTCAATCATCTGGTGGAAGATTTCAATCTCCAATTCCAGCACGGAAATTGAACCGGTTGCTGTACTGTGTGGCCATGCTGCGACAATTGCGGATCTTGGCATTTGTTACCCTGTTATTTCAGGGACGGGTAAGACAGATATTTCAAGTAATGCCGAGGTGAACTCCACTTCAGAAATTTGTGGTGCTCTAGTAAGTGCGTGTTCTGATGGTGTGCTGTGCATTTGGAGCAGGAGAAGTGGACATTGCAGGCGCAGAAGGAAACTACCTGCATGGGTTGGGAGTCCGTCCGTGGTGCGTACGATTCCATCGAAACCAAGATATATATGCGTTGGATGCTATTTTATCGATAGTGTTCATTCGTCTGATAATCACTCAGTTGATTCTGCTGAAAGGATCGATGTTTCAGCTGATAGAGAACATCAGCATAAAAAGCATTCCAAATGTTCCGTCGTTATTGTTGATACATATACTCTTACCATTGTTGAAACTGTTGTGCATGGAAATTTGTCTATTGGCTCCTTGAGGTATATGGCCATAGTCTCACCTTTAACTGGTGAGGGAAATTATTCAGCAGCTATAGTTGATTCATTTGGTCGGCTGCAGATGATTTCGTTATCTAAGGAATCTGACCAAGAAGTGGATCAGGCGAGCTTGCAAAATAGTTCTCAAGTGAATATTCCTGTTTGGACTGAGGTATTGAGTGAGAGAGGCCAGGTTGTGTCAGTTGCGATCCAACACAATGTCATTGCCTTTTTGTTACCTGATCATTGTGTGTTTAAGCTTTTACTCAGTGGTCTTGTGGTTGGAGAGCTTTCTTTTACAGACAGTATCTTTGGCATTAATGAGTTTACGTCCGAAGCTCATGTTTCTGGAGCAATGTTTCTTGATGGTCAAGATGAATTGAATATCAGGAATAACCAGGAGTGCCACGAAACATTTGTTGAAATTTTTGCCGTGTGGAATTCTGTAGGTCATGCAGTTATCTACACGATATCAATTACAAATAAGATATTTGAATACAAACCACTTTATGAAATTCCCGCATCTTGTAATTCCTCAAGTGTGGGATTGTCAATATTTTTCGTTCAACTAAATCAACATTTCATTCGCATTGAATCACTTAGCTCTCAAATTGAAGAGCCTTTTCACTGGACTTCTAATATCACAATCTGGGCACTTCAAGAAAAACAACCTACTCATGGAAAATTGCTGAAATGCAGAATGGTTGGTGAATCTAGTTCATTGACAGAATGGATTCAAGATTCTACTTTTCACAGTGAATTTGTAGGGAAATATGTCGTTGGATCTGGGTTGAAATCTGACTCTAGTTCTGATAGTGTAAATGATTTATATTTTGGTGACTGTAACAATTTTGTACAGAAAGGACAAATTATATCTTCTTCTATGGTTATTTCTGATAGTTTATCTACCCCGTATGCAGTTGTCTATGGCTACTCTAGTGGTGATGTACAAATTTTAAAACTCGATTTGTTCCAAGGGTTGTCTTCTCATAGAGGAAGTCCACACTGTGAAGTGAATCATGTACCACAACTATATCTTTCAGGACACACGGGATCTGTACTGTGTTTGGCGGTTCATCGGTTGGTGAGCAAAAATAACGAACAATTTCTATTATCTGGAAGTATGGACTGCACCATTCGAATTTGGGATCTTGAATCTGGGAATCTTGTTATGGTAATGCACCACCATGTGGCTCCTGTGAGGCAAATTATTCTTCCTCCTGCTCATACCGACCATCCTTGGAGTGATTGTTTTCTTTCAGTTGGGGAGGATTCTTGTGTTGCTCTCGCTTCCTTAGAGACTTTAAAGGTGGAGAGAATGTTTCCTGGACATCGCAACTATCCTGAAAAAGTTGTGTGGGATAGTGTAAGAGGTTATATAGCATGCATGTGCAGTAACCATTCCAGTACTTCTGATACTGTTGATACATTGTATATTTGGGATATTAAAACGGGTGCTCGCGAGCGGATTATTCCTGGGACAGCATCTCAGTCAGTATTCGATAATTTTTGTAAAGGAATTGGCAAGAGCTTTTCTGGTTCTATTCTGAATGGAAATACCTCTGCTTCATCTCTACTCTTTACAACAATTGAAGATGGGAGTGTTTCTGATTCTCTTTCAAGCAATGGTAAGTCAACTAATACATTAAAGGCAATGGCAGATTTGAGTAATAAGGTAGAATCACAGACGTCCAATGGACAGGCTAGAAGTCGAAAGTCTGCCAAATCATTTCTAAACTCGCTCTATAATTTTGAGAGTGGAAGACAGCCTATCAAGTGCTCTTGTCCATTCCCTGGGATTGCTACAATGAGCTTTGATCTTACAGCATTAATGGGTTTCAATCAGAAGTTCAAGTCATTAGCAAATAGAACTAATCTTCAAGATACTGCAGTTCTGAAGGATCAGCAAGCTAGAATGTCAAGTCCCAGTGCCAGGGATAAGAAAATGGACGATTCTTTGGTCCATGAAATTTCAACTGGTTCTAATGAAGAGCTTAACTGGATTTCTTTGTATGAAGAATGTTTAATTCGGTTCAGCTTGTCCTTTTTGCACGTATGGGGTGTTGACAGCGATCTTGACAATTTGCTAGTAACTGACATGAAATTGAAAAAACCAGAGAGCTTTATTGTGGCTTCTGGTTTGCAGGGGGATAAAGGTTCATTAACAGTGTCATTTCCTGGAATGAGAGCTGTTCTTGAGCTTTGGAAGTCATCCGCAGAGTTTTGTGCTATGAGGTCACTCATGATTCTGTCTCTTGCTCAGCACATGATTAGCTTGTTTCACTCAGGTTCATCTGCCAGCAGTGCGCTGGCAGCTTTCTATATGAGGAATTTTGTGGACAAAGTTCCAGATATAAAGCCTCCTTTACTTCAGCTTTTAGTGAGCTTCTGGCAAGATGAAAGTGAACATGTACGTATGGCTGCTCGTTCTTTGTTTCATTGTGCAGCTTCACGTTCAATTCCACTATCACTAAGAGGTGGAAAATCAATTGAGCACGGAAGTTCGAGTGAAATTGGAGATATTGACACTGAACTTAATGGTTTGAGTATGAATGAGAAGCCTGATTACGGAATATCATCAGACTGCTTTCCTAAAAGTGAAGAGGTTTCTCAGGTTGAAGAATTCAACATACGCACCTGGTTAGAATCTTATGAAATGCACGATTGGATTTCTTGTGTAGGGGGAACGAGTCAAGATGCAATGACTTCTCATATTATAGTTGCAGCAGCACTAGCCATTTGGTATCGCAGTCTTGTGAAGAAAAGCCTTCCGATGCTTGTTGTCCATTCATTAGTGAAGTTGGTAAAGTCCATGAACGAGAAATACAGTTCCACCGCTGCAGAGCTCCTTGCTGAAGGTATGGAGAGCACATGGAAGACTTGTTTGGGCAATGAGATTCCTCATCTCATTGAAGATGTTTTACTCCAGCTGGAATATATGAGTGGTCTGCCTCAAAATCAGTTAGTTCAAAATTCATCCCTTTCAGTGGGCATTCGGGAAACCTTGGTTGAAGTTCTTCTCCCAAATCTAGCCATGGCCGATATCCTAGGATTCTTGACGGTAATAGAAAGCCAAATTTGGTCTACTGCATCTGATTCACCTGTTCATCTGGTGTCACTTAAGACACTGATCAGGGTTGTGCGTGGTTCTCCTAGAAACCTGGCGCCATATCTTGACAAGGCTGTTAACTTTATTTTGCAAATCATGGACCCCAGCAACTCAGTCATGCGCAAAATTTGTTATCAGAGATCAATGGCTGCTCTAAAGGAAGTGGTGCATGTCTTTCCAATGGTATCGTTAAATGATTCTTGGACCAGATTGGCAGTTGGTGATGTTATTGGAGAGATTAACAGTGCTAACATTCGTGTGTATGATCTACAAAGTGTTACAAAGATTAAGGTTTTGGATGCAACTGGACCTCCTGGACTTCCAAGTTTGCTTCCAGCAGGTTCAGAAATGCCATTAAGGATCTCAATATCAGCTTTGAGCTTTTCCCCTGATGGCGAGGGGGTAGTTGCCTTTTCTGAACATGGCTTAATGATTCGATGGTGGTCAGTGGGATCTGTATGGTGGGAGAAACTAAGCCGTAACTTTGTTCCTGTTCAATGCACCAAAGTAATATTTGTTCCTCCATGGGAAGGATTCTCGCCCAATTCTTCGAGGTTAAGTATTATGGCAAGTGCAACGGAACGTGATACGCAAGCAGTAGACGTGCAGGACAATGTGAGGGGCTTGAGTCATGGAGACATTTTGAAGATTTTGATTCAAAGTCTCGACCTCTCTTATCGGCTAGAATGGACTGACGAAAGGAAAGTAAAACTCACATGGCATGGCAATGAGTTGGGAACTTTTCAAATATAA 4497 41.54 MKCQTVACIWSGTPLSHRVTATAVLSQPPTLYTGGSDGSIIWWKISISNSSTEIEPVAVLCGHAATIADLGICYPVISGTGKTDISSNAEVNSTSEICGALVSACSDGVLCIWSRRSGHCRRRRKLPAWVGSPSVVRTIPSKPRYICVGCYFIDSVHSSDNHSVDSAERIDVSADREHQHKKHSKCSVVIVDTYTLTIVETVVHGNLSIGSLRYMAIVSPLTGEGNYSAAIVDSFGRLQMISLSKESDQEVDQASLQNSSQVNIPVWTEVLSERGQVVSVAIQHNVIAFLLPDHCVFKLLLSGLVVGELSFTDSIFGINEFTSEAHVSGAMFLDGQDELNIRNNQECHETFVEIFAVWNSVGHAVIYTISITNKIFEYKPLYEIPASCNSSSVGLSIFFVQLNQHFIRIESLSSQIEEPFHWTSNITIWALQEKQPTHGKLLKCRMVGESSSLTEWIQDSTFHSEFVGKYVVGSGLKSDSSSDSVNDLYFGDCNNFVQKGQIISSSMVISDSLSTPYAVVYGYSSGDVQILKLDLFQGLSSHRGSPHCEVNHVPQLYLSGHTGSVLCLAVHRLVSKNNEQFLLSGSMDCTIRIWDLESGNLVMVMHHHVAPVRQIILPPAHTDHPWSDCFLSVGEDSCVALASLETLKVERMFPGHRNYPEKVVWDSVRGYIACMCSNHSSTSDTVDTLYIWDIKTGARERIIPGTASQSVFDNFCKGIGKSFSGSILNGNTSASSLLFTTIEDGSVSDSLSSNGKSTNTLKAMADLSNKVESQTSNGQARSRKSAKSFLNSLYNFESGRQPIKCSCPFPGIATMSFDLTALMGFNQKFKSLANRTNLQDTAVLKDQQARMSSPSARDKKMDDSLVHEISTGSNEELNWISLYEECLIRFSLSFLHVWGVDSDLDNLLVTDMKLKKPESFIVASGLQGDKGSLTVSFPGMRAVLELWKSSAEFCAMRSLMILSLAQHMISLFHSGSSASSALAAFYMRNFVDKVPDIKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRSIPLSLRGGKSIEHGSSSEIGDIDTELNGLSMNEKPDYGISSDCFPKSEEVSQVEEFNIRTWLESYEMHDWISCVGGTSQDAMTSHIIVAAALAIWYRSLVKKSLPMLVVHSLVKLVKSMNEKYSSTAAELLAEGMESTWKTCLGNEIPHLIEDVLLQLEYMSGLPQNQLVQNSSLSVGIRETLVEVLLPNLAMADILGFLTVIESQIWSTASDSPVHLVSLKTLIRVVRGSPRNLAPYLDKAVNFILQIMDPSNSVMRKICYQRSMAALKEVVHVFPMVSLNDSWTRLAVGDVIGEINSANIRVYDLQSVTKIKVLDATGPPGLPSLLPAGSEMPLRISISALSFSPDGEGVVAFSEHGLMIRWWSVGSVWWEKLSRNFVPVQCTKVIFVPPWEGFSPNSSRLSIMASATERDTQAVDVQDNVRGLSHGDILKILIQSLDLSYRLEWTDERKVKLTWHGNELGTFQI* 1499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16832742 16843703 + Chy7G140280.1 Chy07g01198 231209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01198 1498 SMART WD40_4 5 44 IPR001680 GO:0005515
Chy07g01198 1498 SMART WD40_4 551 595 IPR001680 GO:0005515
Chy07g01198 1498 SMART WD40_4 598 643 IPR001680 GO:0005515
Chy07g01198 1498 SMART WD40_4 1363 1397 IPR001680 GO:0005515
Chy07g01198 1498 SMART WD40_4 646 693 IPR001680 GO:0005515
Chy07g01198 1498 SMART WD40_4 53 114 IPR001680 GO:0005515
Chy07g01198 1498 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 604 IPR001680 GO:0005515
Chy07g01198 1498 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1497 - -
Chy07g01198 1498 Gene3D - 5 286 IPR015943 GO:0005515
Chy07g01198 1498 Gene3D - 535 807 IPR015943 GO:0005515
Chy07g01198 1498 SUPERFAMILY WD40 repeat-like 7 705 IPR036322 GO:0005515
Chy07g01198 1498 ProSitePatterns Trp-Asp (WD) repeats signature. 582 596 IPR019775 -
Chy07g01198 1498 PANTHER RABCONNECTIN-3B, ISOFORM A 1 1497 - -
Chy07g01198 1498 Pfam WD domain, G-beta repeat 557 595 IPR001680 GO:0005515
Chy07g01198 1498 SUPERFAMILY ARM repeat 956 1309 IPR016024 -
Chy07g01198 1498 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 600 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01198 K24738 WDR7; rabconnectin-3b - csv:101221785 2853.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01198 Chy-Chr7:16832742 Chy11g01519 Chy-Chr11:21813764 3.53E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g47 . Blo03g00223 Bda06g00120 . . Bpe07g00097 . . . . . . . . . . . . . . . . . . Cla07g00745 Cam07g0798 Cec07g0863 Cco07g0835 Clacu07g0778 Cmu07g0786 Cre07g1139 . . Cone6ag0814 Cone9ag0813 . . . Cme07g01612 . . . . . . . Bma12g00068 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00613 Chy07g01198 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007130 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01198 Chy_Chr07 FPKM 10.385395 11.173922 16.588249 15.58592 8.881218 9.303033 9.000848 18.320734 17.357559 16.968582