Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01202 ATGGTACTTGTTTCCAGCAATGATAATGGAAATGCAAAGAAAGTTTTGTCCAAATTAGCCAAAGGAAATGGGCATGGTGAAGATTCCTCTTATTTTGATGGGTGGAAAGCTTATGATTCTGATCCTTTTCATCCTATTATCAATCCTCGTGGTGTTATTCAAATGGGTTTAGCTGAAAATCAGCTTTCTTTTGAATTTGTGGAGAAATGGATGAAAAACAATCCACAAGCTTCAATTTGTAGTGTTGAAGGAATTGATGAGTTCAAGGATATTGCTATCTTTCAAGATTATCATGGATTGCCAGAGTTTAGAAACGCTGTGGCGAACTTCATGGGAAAAGTGAGAGGGAACCGAGTCAAATTTGATCCTGACCGAGTTGTGATGAGTGGTGGAGCAACTGGAGCTCATGAAACCATGGCGTTTTGTTTGGCTGATCCTGGTGAAGCATTTCTTGTTCCTGTTCCTTATTATCCAGGATTCGACAGAGATTTAAGGTGGAGGACAGGAGTGGAAATAGTTCCAGTGATATGTGAAAGTTCAAACGATTTTAAATTAACAAGAGAAGCCTTAGAGACAGCATATGAAGAAGCTCAAAAATCCAACATAAAAATCAAAGGTCTACTCATAACGAATCCTTCAAATCCACTCGGAACGGTTTACGATAGACAAACACTTGAAACTGCCGTATCGTTTATCAACCAAAAGAATATCCACTTAGTGTGCGACGAAATCTACGCTGCCACTGTCTTTGCAGAGCCCGGTTTCATTAGTATCTCTGAAGTGATCGACAACAGTGACATTGAATGCGATAGAAATCTTGTCCATGTCGTTTATAGCCTATCCAAAGACATGGGATTCCCTGGATTTCGTGTCGGTATTATCTATTCTTATAATGATGCTGTTGTTGCATGCGCTCGTAAGATGTCAAGCTTTGGCCTCGTATCCTCGCAAACTCAATATTTGATTGCATCGATGTTGTTGGATGATGTGTTTGTCGACAACTTTCTTGCTGGGAGTGCTGAAAAACTTGCAGCGCGTCATCGAAACTTCACAAAAGGGCTTGCTCAGGTTGGAATTGGATATTTGAAAGGGAGTGGAGGATTATTTCTATGGATGGATCTGCGTCATCTTTTGAAAGAGAAGACATTGGAAGCAGAAATGGCATTATGGAAAGTGATTATCAATGAAGTTAAACTAAATGTTTCACCAGGTTCTTCATTCCATTGCTCAGAACCAGGATGGTTTAGGGTTTGTTTCGCAAATATGGATGACAATACAATGGACATTTCCATCACCAGAATTAGAAACTTTGTGCTTCAAAACAAGGAGGTAACAACTAAGGTCAAGAAACAAAAATTCTGTTGGCGTCAAAGCAGCCTCGAACTTCGGTTGTCATCTCGAAGACTCGAAGACATCATGTCACCACACTCACCGTTGCCTCAATCCCCGATGCTTCGTGCAACAACTTAA 1470 40.34 MVLVSSNDNGNAKKVLSKLAKGNGHGEDSSYFDGWKAYDSDPFHPIINPRGVIQMGLAENQLSFEFVEKWMKNNPQASICSVEGIDEFKDIAIFQDYHGLPEFRNAVANFMGKVRGNRVKFDPDRVVMSGGATGAHETMAFCLADPGEAFLVPVPYYPGFDRDLRWRTGVEIVPVICESSNDFKLTREALETAYEEAQKSNIKIKGLLITNPSNPLGTVYDRQTLETAVSFINQKNIHLVCDEIYAATVFAEPGFISISEVIDNSDIECDRNLVHVVYSLSKDMGFPGFRVGIIYSYNDAVVACARKMSSFGLVSSQTQYLIASMLLDDVFVDNFLAGSAEKLAARHRNFTKGLAQVGIGYLKGSGGLFLWMDLRHLLKEKTLEAEMALWKVIINEVKLNVSPGSSFHCSEPGWFRVCFANMDDNTMDISITRIRNFVLQNKEVTTKVKKQKFCWRQSSLELRLSSRRLEDIMSPHSPLPQSPMLRATT* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16877750 16879734 + Chy7G140320.1 Chy07g01202 231213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01202 489 Gene3D - 75 328 IPR015421 GO:0003824
Chy07g01202 489 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 11 449 - -
Chy07g01202 489 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 279 292 IPR004838 GO:0003824|GO:0009058|GO:0030170
Chy07g01202 489 Pfam Aminotransferase class I and II 53 434 IPR004839 GO:0009058|GO:0030170
Chy07g01202 489 SUPERFAMILY PLP-dependent transferases 25 438 IPR015424 -
Chy07g01202 489 CDD AAT_like 94 435 - -
Chy07g01202 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 88 104 - -
Chy07g01202 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 237 260 - -
Chy07g01202 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 305 328 - -
Chy07g01202 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 125 145 - -
Chy07g01202 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 201 225 - -
Chy07g01202 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 147 168 - -
Chy07g01202 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 55 81 - -
Chy07g01202 489 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 273 297 - -
Chy07g01202 489 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 11 449 - -
Chy07g01202 489 Gene3D Aspartate Aminotransferase, domain 1 41 433 IPR015422 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01202 K20772 ACS1_2_6; 1-aminocyclopropane-1-carboxylate synthase 1/2/6 [EC:4.4.1.14] - csv:101212728 975.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01621 Chy-Chr3:18135896 Chy07g01202 Chy-Chr7:16877750 3.14E-167 dispersed
Chy06g00879 Chy-Chr6:6343338 Chy07g01202 Chy-Chr7:16877750 5.00E-134 dispersed
Chy07g00886 Chy-Chr7:12300091 Chy07g01202 Chy-Chr7:16877750 8.63E-78 dispersed
Chy07g01202 Chy-Chr7:16877750 Chy11g01668 Chy-Chr11:23155589 0 dispersed
Chy07g01202 Chy-Chr7:16877750 Chy02g00811 Chy-Chr2:5112420 6.90E-163 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01202 Chy_Chr07 FPKM 9.964264 9.894073 18.23023 17.07128 8.818551 8.816796 8.890112 28.562582 30.554029 31.218027