Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01211 ATGGGATATTTTGCTTCTGTCCAGGTTTTCTGTCTGATCTCTGCAGTTCTTATTGTGACCAGTGATTCCTTTGCGTTTAATGAAGGTAGATGGACTTCTCTTCTAGATCTTGATCTTTTGTTGCCTGTGACTGGGATGTTCTTCGTTTTCTACTTTTCTCTAGCATCGGCTCTTAAATCCTTCAAAGATCAAATATCTGAAGACCCAACTCGAGTTTTTTCAAATTGGGATTTACAAGTTGAAAAAAACCCCTGTAACTGGTCTGGAATTGCCTGTTCTCCAGATGGAGGCCATGTTATAAAGCTAGACATTTCTAGGGCATCACTGAAAGGATTTCTAGCACCAAGCTTGGGTCAACTCAGCTTCCTGCAAGAACTGTATCTTCATGACAACAATCTGCTTGGAACAATACCCAAGGAGCTGGGATTATTGAAGAAACTTAAGGTCCTTGACTTGGGAACAAATCGACTCTCTGGCCCGATTCCCTCAGAAATTGGGGGTTTAACAGATATTCTGAAAATCAACTTTGAATCAAACGGATTGACCGGGAGGCTACCCCCTGAGCTGGGAAATTTGAGATACCTCAGAGAACTTAGGGTTGATAGGAATAAGCTTCAAGGATCTATTCCAGATGGTGACAATTCAAAGTATACATCCAATATGCATAGAAGGTATGGTCCAAATGCACCTGGATTCTGTCACTTAACTGAGCTCAAGGTTGCAGATTTTTCATACAATTTCTTTGTTGGGAAAATACCCAAGTGCTTAGAGGACCATCTCCCAAAGTCAAGTTTTCAAGGGAACTGTCTTCAATACAATGATCCTAAACAGCGTACTGCAGCTCAATGTGGTGCTCAATCACATCCAGGAGGCAGCTCTAAGCATGTACCAGTTGAACATGCTTCAAAACACCAAAGAGCTCCAAAACCTGCCTGGCTTCTAACCCTTGAAATCATCACTGGAATCACGACGGGTTCTTTATTTATAGTTGCTGTGATCACTTCTCTTCGGAGATGCAACGGCAAATCCTCAATCATCATCCCGTGGAAGAAATCCTCAAGTGGGAAGGACCATGTTACCCTTCACATCGACACTGAGATGTTGAAAGATGTGCCAAGCATCAGCAGGCAAGAGCTTGAAGTAGCCTGTGAAGATTTCAGTAATATTATTGGCTCCTCACCAGATAGTATAGTGTACAAGGGCACCATGAAAGGTGGACCTGAGATTGCTGTTATCTCAATATGCATTAAAGAAGAAAACTGGACAGACTATCTCGAGCTTTATTTTCAGCGAGAGGTGGCAGATCTAGCAAGACTAAATCATGCGAACGTAGGAAAGTTGCTAGGCTATTGTAAAGAAAGCAGTCCATTTACTAGGATGCTGGTTTTTGAATATGCATCAAATGGCACGTTATATGAGCACCTTCATTGTAAGTCGAGTCCCTTTTTCTTTTACCTTAACCAAATTCATTACTTTGGAGATAACTGTTGTGTGCTTGCAGATGGAGAAGGTTGTTTATCCTGGACACGTCGCATGAATATAATTCTGGGCATGGCCCGCGGACTTAAGTATCTTCATAGTGAACTTCAACCACCATTTACTATATCAGAGTTAAATTCGGGTGCTGTATATCTTACAGATGACTTCTCACCCAAGCTGGTTGACTTTGAAAGCTGGAAGACCATTCTTTCAAGGTCTGAAAAGAACTCAGGCTCCATTGGAAACCAAGTCACTCAATGTATTCTTCCAAGTTCGCTTGAACCACGTCATCTCGACATAGAAAGTAACATCTACGCATTTGGTGTTCTTTTACTGGAAGTAGTCAGTGGGAGACCTCCATACTGTAAGGACAAAGAATGCTTAGTAGACTGGGCCAAGGAATACCTCGATTCGCCAGATGGGATGTCCTGCTTGGTAGACCCAGAAGTGAAGCATTTTGCAGATGAAGATCTGAGGACGATATGTGAGGTTGTAAATCTTTGCATTCATCCACAGCCAGCCAAGCTGATTTGTATGCAGGACTTATGCAGCATGTTAGAGACCAGAATTGATACCTCATTCTCTGTTGAGTTGAAGGCTTCTTCTCTTGCTTGGGCGGAACTTGCACTTTCATCATAG 2118 42.35 MGYFASVQVFCLISAVLIVTSDSFAFNEGRWTSLLDLDLLLPVTGMFFVFYFSLASALKSFKDQISEDPTRVFSNWDLQVEKNPCNWSGIACSPDGGHVIKLDISRASLKGFLAPSLGQLSFLQELYLHDNNLLGTIPKELGLLKKLKVLDLGTNRLSGPIPSEIGGLTDILKINFESNGLTGRLPPELGNLRYLRELRVDRNKLQGSIPDGDNSKYTSNMHRRYGPNAPGFCHLTELKVADFSYNFFVGKIPKCLEDHLPKSSFQGNCLQYNDPKQRTAAQCGAQSHPGGSSKHVPVEHASKHQRAPKPAWLLTLEIITGITTGSLFIVAVITSLRRCNGKSSIIIPWKKSSSGKDHVTLHIDTEMLKDVPSISRQELEVACEDFSNIIGSSPDSIVYKGTMKGGPEIAVISICIKEENWTDYLELYFQREVADLARLNHANVGKLLGYCKESSPFTRMLVFEYASNGTLYEHLHCKSSPFFFYLNQIHYFGDNCCVLADGEGCLSWTRRMNIILGMARGLKYLHSELQPPFTISELNSGAVYLTDDFSPKLVDFESWKTILSRSEKNSGSIGNQVTQCILPSSLEPRHLDIESNIYAFGVLLLEVVSGRPPYCKDKECLVDWAKEYLDSPDGMSCLVDPEVKHFADEDLRTICEVVNLCIHPQPAKLICMQDLCSMLETRIDTSFSVELKASSLAWAELALSS* 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16928563 16932589 + Chy7G140410.1 Chy07g01211 231222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01211 705 Gene3D Transferase(Phosphotransferase) domain 1 467 694 - -
Chy07g01211 705 Gene3D Ribonuclease Inhibitor 54 167 IPR032675 -
Chy07g01211 705 Gene3D Phosphorylase Kinase; domain 1 358 465 - -
Chy07g01211 705 PANTHER PROTEIN MALE DISCOVERER 2 40 705 - -
Chy07g01211 705 Gene3D Ribonuclease Inhibitor 168 289 IPR032675 -
Chy07g01211 705 SUPERFAMILY Protein kinase-like (PK-like) 377 686 IPR011009 -
Chy07g01211 705 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 40 705 - -
Chy07g01211 705 Pfam Protein tyrosine and serine/threonine kinase 388 616 IPR001245 GO:0004672|GO:0006468
Chy07g01211 705 MobiDBLite consensus disorder prediction 280 304 - -
Chy07g01211 705 SUPERFAMILY L domain-like 54 256 - -
Chy07g01211 705 Pfam Leucine rich repeat N-terminal domain 56 93 IPR013210 -
Chy07g01211 705 ProSiteProfiles Protein kinase domain profile. 384 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01211 - - - csv:101211360 1240.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy07g01211 Chy09g01210 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01211 Chy-Chr7:16928563 Chy09g01210 Chy-Chr9:14237132 0 dispersed
Chy07g01211 Chy-Chr7:16928563 Chy10g00389 Chy-Chr10:9513765 2.75E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71391 PF07714 PK_Tyr_Ser-Thr 3.50E-18 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01211 Chy_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0