Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01216 ATGGAGCAATCTCCAGCGGATTCTTCGACGACGAGCATCGAAACTGAATCTCAGATTCCAGCGACATCCCCAAATTCGACCACTTCTTCTGTCATTGAAGATTGCACCAAAACCCAATCTTCTTTGAGCCAAACCCAGATTCTCAAAGCCATTGAAGTCGTTGAGAAGGACTCTCTCGCCATTGCTGAGAGCTTCACCTCTCTCTTTGTTTCCCTTCGCTCGGTCCTCTCCGAGGTCACCAGCAACTCAATTGATCATATGCATTGCTTCAACGATGCAGCAGGCCGCCTTCAAGAATCCGTGCTTGATGCGGCAACGAAGGGCAATCGATACATTAATTCTTCCTTGAGATTGAATCAGGAAATGAAAGGCATGGATAATCTAGCTGCTCAGCTGGAGTATGGGAGAGATTCTGCATCATCATTCCATATACAAAAAGGTTATGGAAGCCATTCGTTTCTAAAAGGAAGAGCTTCAAGTGGTCTTGGCGAAGAGAGCACACGTGTCCTTGCATTACGAGGAGTCTATGTCATTATGGCTGTAAGGAATGTTGAAGCAGGAAGAAAAGTAAAAGAAGCAGTGTTGAAGGAATCCCCTTCTGCTAAAATTGATGTCATGGAGTTAGATCTTTCTTCGATGGAATCTGTGAGGAAATTTGCAGCAGATTATATTGCATCAGGCCTTCCACTAAATATTCTCATAAACAATGCGGGTGTTATGGCTACTCCTTTTATGCTTTCCCATGATGGCATAGAACTGCAGTTTGCAACAAATCATTTAGGACATTTTCTCCTGACGAACCTTCTGCTGGAAACCATGAAAAAAACTGTGCTTGAAAGCAAAAAGGAGGGAAGAATTGTCAATCTATCATCAGAGGGTCACCGAATGACATACGGTGAAGGAATTCGTTTTGATAAAATCAATAATGAATCAGAGTACAGAACCATCTTAGCTTATGGACAATCAAAGCTTTCCAACATATTGCACGCAAAAGAGCTTGCCAGGCGGTTAAAGATTGAAGGGGTAGAAATAACAGCCAACGCTCTTCATCCTGGAGCAATTGCTACCAATCTGCTACGCTTCCATAGTACCATTAATGCTGTTACTAATTTGGTTGCTAAATTCGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACTCAGTGTTATGTAGCACTGAATCCCCAAGTGAAAGGGGTAAGTGGAGAGTATTTTGTTGATAGTAATATTGCTAACCCAACAAATCATGCTAAAGATATGGATTTAGCCAAGAAACTGTGGGATTTCAGTGTGGATCTAACCAACCCAAAATAA 1311 42.33 MEQSPADSSTTSIETESQIPATSPNSTTSSVIEDCTKTQSSLSQTQILKAIEVVEKDSLAIAESFTSLFVSLRSVLSEVTSNSIDHMHCFNDAAGRLQESVLDAATKGNRYINSSLRLNQEMKGMDNLAAQLEYGRDSASSFHIQKGYGSHSFLKGRASSGLGEESTRVLALRGVYVIMAVRNVEAGRKVKEAVLKESPSAKIDVMELDLSSMESVRKFAADYIASGLPLNILINNAGVMATPFMLSHDGIELQFATNHLGHFLLTNLLLETMKKTVLESKKEGRIVNLSSEGHRMTYGEGIRFDKINNESEYRTILAYGQSKLSNILHAKELARRLKIEGVEITANALHPGAIATNLLRFHSTINAVTNLVAKFVLKNVQQGAATQCYVALNPQVKGVSGEYFVDSNIANPTNHAKDMDLAKKLWDFSVDLTNPK* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16956280 16966070 + Chy7G140460.1 Chy07g01216 231227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01216 436 Pfam short chain dehydrogenase 158 298 IPR002347 -
Chy07g01216 436 CDD retinol-DH_like_SDR_c_like 158 426 - -
Chy07g01216 436 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 157 433 - -
Chy07g01216 436 Pfam BLOC-1-related complex sub-unit 6 C-terminal helix 49 132 IPR046465 -
Chy07g01216 436 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 410 IPR036291 -
Chy07g01216 436 PANTHER RETINOL DEHYDROGENASE 157 433 - -
Chy07g01216 436 PRINTS Glucose/ribitol dehydrogenase family signature 319 338 IPR002347 -
Chy07g01216 436 PRINTS Glucose/ribitol dehydrogenase family signature 342 359 IPR002347 -
Chy07g01216 436 PRINTS Glucose/ribitol dehydrogenase family signature 228 239 IPR002347 -
Chy07g01216 436 PRINTS Glucose/ribitol dehydrogenase family signature 278 294 IPR002347 -
Chy07g01216 436 MobiDBLite consensus disorder prediction 1 34 - -
Chy07g01216 436 Gene3D - 158 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01216 - - K19329 csv:101210378 516.924
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01216 Chy-Chr7:16956280 Chy09g01374 Chy-Chr9:15541917 5.12E-146 dispersed
Chy12g01574 Chy-Chr12:19273601 Chy07g01216 Chy-Chr7:16956280 9.26E-31 transposed
Chy07g01216 Chy-Chr7:16956280 Chy09g01373 Chy-Chr9:15537496 8.56E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g318 . . . . . . . . . Cmo16g00643 . . . . . . . . . . . . . . Cla07g00771 Cam07g0830 Cec07g0885 Cco07g0862 Clacu07g0807 Cmu07g0813 Cre07g1167 . . . . . . . Cme07g01629 Blo03g00339 . Bda07g00479 . . . . . . . . . Cma16g00594 . . . . . . . . . . . . . . . . . . . Csa04g00595 Chy07g01216 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01216 Chy_Chr07 FPKM 31.790575 28.329134 23.264004 24.58976 26.807875 23.165485 27.913494 31.89645 32.484867 37.246746