Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01218 ATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGGAAACTAAACCGTTTAGTTATCCCAAAACAACATGCTGAAAAATACTTCCCACTTGATTCTTCATCAAACGAAAAAGGTCTTCTCTTAAACTTCGAAGATCGTTGTGGTAAACTATGGCGGTTTCGTTACTCTTACTGGACTAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGCTTTGTCAAAGACAAAAGACTCGATGCTGGTGATATTGTTTCTTTTCAAAGACCCCTTCATCGTAATCAAGATCGTTTCTTTATCGATTGGCGACGCCGTCCTCCGCACCCGGCTGTCGACATGCCTTTTCATTTCCACCGCCATGATGGTGGCACCGGTGCCGCCCAATTTCCTCCTCCTCCTCATCATCATCACCATTTTCAGCTTCATAGCCAGTGGAATAATAATCCAGTGGCCACACCCTTATCTTTACAAAGGGACCACGTCCTCCACTTGCCACAGTATAATAATAATGTCAGTTTATTTCATAATACATATAATCATCATCCTCATCATAATCGTTATCTTGACGGTTCGTATGGTGGAGCATCGGTCTTTTACCATTTGAGATCCCCAATCGCACCACCGCAGATAGAGTCGGTGCCAGTTGTAGCGGATGGAAATGGTGGTAATGGTGGTGGAGGTAGTGGAATTGGGAGAACGTCTGCGGCTAAGACCACGTTGAGGCTTTTTGGTGTTGACATGGAATGTGAGGTATCTGATGATGAGTGTGACGTAGCCACAACTTCGAAGACAATGTCATCGTCGTCGCAATTTCATGTTTATAATGGAATGCCGATGCCGATGCTGACACCGATGACGATGCAGATGCCCACGAGCAATAATAATATATCAACTATGGACTTCTTTGAGAAAGGGAAGTCGTCGATGTCGTCAATGTCATCTTTTGATTTTGGTGCTTGA 960 44.27 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKDKRLDAGDIVSFQRPLHRNQDRFFIDWRRRPPHPAVDMPFHFHRHDGGTGAAQFPPPPHHHHHFQLHSQWNNNPVATPLSLQRDHVLHLPQYNNNVSLFHNTYNHHPHHNRYLDGSYGGASVFYHLRSPIAPPQIESVPVVADGNGGNGGGGSGIGRTSAAKTTLRLFGVDMECEVSDDECDVATTSKTMSSSSQFHVYNGMPMPMLTPMTMQMPTSNNNISTMDFFEKGKSSMSSMSSFDFGA* 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16986631 16987590 - Chy7G140480.1 Chy07g01218 231229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01218 319 CDD B3_DNA 1 89 IPR003340 GO:0003677
Chy07g01218 319 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 289 IPR044800 GO:0003700
Chy07g01218 319 Gene3D - 1 112 IPR015300 -
Chy07g01218 319 SMART B3_2 2 106 IPR003340 GO:0003677
Chy07g01218 319 Pfam B3 DNA binding domain 2 105 IPR003340 GO:0003677
Chy07g01218 319 SUPERFAMILY DNA-binding pseudobarrel domain 1 100 IPR015300 -
Chy07g01218 319 ProSiteProfiles B3 DNA-binding domain profile. 2 106 IPR003340 GO:0003677
Chy07g01218 319 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 1 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01218 - - - csv:101220139 608.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01218 Chy-Chr7:16986631 Chy11g01776 Chy-Chr11:24118846 1.38E-59 dispersed
Chy04g01900 Chy-Chr4:25061405 Chy07g01218 Chy-Chr7:16986631 7.05E-48 transposed
Chy07g01218 Chy-Chr7:16986631 Chy09g01354 Chy-Chr9:15378053 3.21E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g277 . . . . . . Bma07g01046 Bma14g00089 Cmo06g00500 Cmo16g00647 . . . Car15g01205 . Cpe14g00507 . . . . . . . . Cla07g00776 Cam07g0833 Cec07g0888 Cco07g0865 Clacu07g0810 Cmu07g0816 Cre07g1170 . . . . . . . Cme07g01632 Blo03g00788 Blo19g00130 Bda07g00161 . Bpe08g00913 Bpe11g00381 . . . . . Cma06g00497 Cma16g00597 . . Cpe08g00992 . . . . . . . . . . . . . . . . Csa04g00592 Chy07g01218 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01900 . 1 164 RAV Transcription Factor Family AT2G36080 60.6 1.4e-48 189.5
Chy11g01776 . 15 127 RAV Transcription Factor Family AT2G36080 69.8 9.8e-42 166.8
Chy09g01354 . 29 140 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Chy10g01117 CCT,ECH 173 302 RAV Transcription Factor Family AT2G36080 58.8 3.8e-38 154.8
Chy07g01218 . 1 105 RAV Transcription Factor Family AT2G36080 70.6 5.0e-38 154.5
Chy09g01354 . 28 146 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Chy11g01776 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Chy07g01218 . 1 249 RAV Transcription Factor Family AT2G46870 50.6 2.7e-50 196.1
Chy10g01117 CCT,ECH 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Chy04g01900 . 36 156 RAV Transcription Factor Family AT2G46870 62.9 1.5e-37 153.7
Chy04g01900 . 33 167 RAV Transcription Factor Family AT3G11580 65.7 1.3e-44 176.8
Chy09g01354 . 29 142 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Chy11g01776 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Chy07g01218 . 1 105 RAV Transcription Factor Family AT3G11580 65.8 6.7e-38 154.5
Chy09g01354 . 30 148 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Chy11g01776 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Chy10g01117 CCT,ECH 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Chy04g01900 . 41 156 RAV Transcription Factor Family AT3G61970 63.8 7.8e-39 157.9
Chy09g01354 . 32 147 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Chy11g01776 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Chy07g01218 . 1 130 RAV Transcription Factor Family AT4G01500 55.8 3.7e-37 152.5
Chy04g01900 . 41 206 RAV Transcription Factor Family AT5G06250 54.8 3.0e-50 195.7
Chy07g01218 . 1 105 RAV Transcription Factor Family AT5G06250 69.8 4.8e-40 161.8
Chy09g01354 . 32 140 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Chy11g01776 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Chy10g01117 CCT,ECH 179 298 RAV Transcription Factor Family AT5G06250 57.9 5.0e-37 151.8
Chy02g02107 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 4.3e-86 315.1
Chy02g01404 . 52 266 RAV Transcription Factor Family AT1G50680 63.3 4.3e-78 288.5
Chy02g02107 . 41 340 RAV Transcription Factor Family AT1G51120 52.5 1.9e-84 309.7
Chy02g01404 . 52 266 RAV Transcription Factor Family AT1G51120 63.2 5.9e-78 288.1
Chy10g01117 CCT,ECH 22 343 RAV Transcription Factor Family AT1G13260 65.9 1.1e-105 380.2
Chy09g00618 CCT,ECH 1 289 RAV Transcription Factor Family AT1G13260 61.0 4.1e-92 335.1
Chy04g01900 . 41 193 RAV Transcription Factor Family AT1G13260 57.5 3.4e-38 156.0
Chy09g01354 . 33 140 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Chy11g01776 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Chy10g01117 CCT,ECH 15 341 RAV Transcription Factor Family AT3G25730 62.3 3.7e-98 355.1
Chy09g00618 CCT,ECH 34 289 RAV Transcription Factor Family AT3G25730 65.6 3.0e-87 318.9
Chy10g01117 CCT,ECH 1 345 RAV Transcription Factor Family AT1G68840 61.6 8.2e-112 400.6
Chy09g00618 CCT,ECH 1 292 RAV Transcription Factor Family AT1G68840 58.8 7.9e-91 330.9
Chy04g01900 . 41 173 RAV Transcription Factor Family AT1G68840 62.7 1.6e-38 157.1
Chy09g01354 . 32 140 RAV Transcription Factor Family AT1G68840 70.3 2.1e-38 156.8
Chy11g01776 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
Chy10g01117 CCT,ECH 15 341 RAV Transcription Factor Family AT3G25730 62.3 3.7e-98 355.1
Chy09g00618 CCT,ECH 34 289 RAV Transcription Factor Family AT3G25730 65.6 3.0e-87 318.9
Chy02g02107 . 41 340 RAV Transcription Factor Family AT1G51120 52.5 1.9e-84 309.7
Chy02g01404 . 52 266 RAV Transcription Factor Family AT1G51120 63.2 5.9e-78 288.1
Chy04g01900 . 33 167 RAV Transcription Factor Family AT3G11580 65.7 1.3e-44 176.8
Chy09g01354 . 29 142 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Chy11g01776 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Chy07g01218 . 1 105 RAV Transcription Factor Family AT3G11580 65.8 6.7e-38 154.5
Chy09g01354 . 32 147 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Chy11g01776 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Chy07g01218 . 1 130 RAV Transcription Factor Family AT4G01500 55.8 3.7e-37 152.5
Chy04g01900 . 1 164 RAV Transcription Factor Family AT2G36080 60.6 1.4e-48 189.5
Chy11g01776 . 15 127 RAV Transcription Factor Family AT2G36080 69.8 9.8e-42 166.8
Chy09g01354 . 29 140 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Chy10g01117 CCT,ECH 173 302 RAV Transcription Factor Family AT2G36080 58.8 3.8e-38 154.8
Chy07g01218 . 1 105 RAV Transcription Factor Family AT2G36080 70.6 5.0e-38 154.5
Chy04g01900 . 41 206 RAV Transcription Factor Family AT5G06250 54.8 3.0e-50 195.7
Chy07g01218 . 1 105 RAV Transcription Factor Family AT5G06250 69.8 4.8e-40 161.8
Chy09g01354 . 32 140 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Chy11g01776 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Chy10g01117 CCT,ECH 179 298 RAV Transcription Factor Family AT5G06250 57.9 5.0e-37 151.8
Chy09g01354 . 28 146 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Chy11g01776 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Chy07g01218 . 1 249 RAV Transcription Factor Family AT2G46870 50.6 2.7e-50 196.1
Chy10g01117 CCT,ECH 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Chy04g01900 . 36 156 RAV Transcription Factor Family AT2G46870 62.9 1.5e-37 153.7
Chy02g02107 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 4.3e-86 315.1
Chy02g01404 . 52 266 RAV Transcription Factor Family AT1G50680 63.3 4.3e-78 288.5
Chy09g01354 . 30 148 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Chy11g01776 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Chy10g01117 CCT,ECH 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Chy04g01900 . 41 156 RAV Transcription Factor Family AT3G61970 63.8 7.8e-39 157.9
Chy10g01117 CCT,ECH 22 343 RAV Transcription Factor Family AT1G13260 65.9 1.1e-105 380.2
Chy09g00618 CCT,ECH 1 289 RAV Transcription Factor Family AT1G13260 61.0 4.1e-92 335.1
Chy04g01900 . 41 193 RAV Transcription Factor Family AT1G13260 57.5 3.4e-38 156.0
Chy09g01354 . 33 140 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Chy11g01776 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Chy10g01117 CCT,ECH 1 345 RAV Transcription Factor Family AT1G68840 61.6 8.2e-112 400.6
Chy09g00618 CCT,ECH 1 292 RAV Transcription Factor Family AT1G68840 58.8 7.9e-91 330.9
Chy04g01900 . 41 173 RAV Transcription Factor Family AT1G68840 62.7 1.6e-38 157.1
Chy09g01354 . 32 140 RAV Transcription Factor Family AT1G68840 70.3 2.1e-38 156.8
Chy11g01776 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000626 3 5 4 4 3 3 5 3 3 3 3 3 6 3 3 6 3 1 4 3 3 2 3 3 3 3 2 7 4 2 103
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18331 PF02362 B3 4.80E-28 CL0405 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01218 Chy_Chr07 FPKM 4.175291 5.23054 6.489228 7.167878 9.379263 11.503617 10.749716 6.2092 5.048881 6.01163