Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01225 ATGCGGGTGGGAGTATACAATATACTGCTTGACATTTACTGGAGTTCGACATCTGTGAAGTTAGATTCCACTGAGGCAAGCAAAATTTATAACGTCTTACTGATCAGCAAAAGAGGGCTGTTGGTTATTATAGCTCAAGTTGAGCTTGAATTCTTGCACTATATGGACCACAGGCTTCAGAAGTTTTGTGCTTCCAATATACAATCTCCTTTCCGTGAGGAGAGTGGGGATGAAGAGCTTTCAGTTCTTCCCAGGCACACTAAAGTTATTGTCACTGGAAATAATAGAACAAAGTCTGTTTTATTGGGATTGCAAGGGGTGGTTAAGAAGGCTGTTGGCCTTGGAGGCTGGCATTGGCTGGTTTTGAAAAATGGGGTTGAAGTGAAGCTACAAAGGAATGCATTGAGTGTGCTGGAACATCCCACAGGAAACGAAAATGATGAACATGATTTGGACAACTCAAGTTGTAGCTCCGACATTGGAGAGAAGGACAATGATTTCTCTAGCAGCGTTGTTTTCCACAAACTTAGCAAACCAAAAGTGAGGCAGATTAAGCCTTGGGCTCCATCTTCATCAGCAAAGTCAACTGGTCGGGGCAGCTATGGAGAAATTCAATCTATTCACATGCCAAAGTCAGGGACGCGGGTTAAACTGGGGAAACTAGGAACAGAGTCTTTGTGGAGATATATCAAGCACTTCAATCTAGTGAATAGCATTTCAAATACTTCAAGGGACCAAATCCTTCAAGTTGTACAACGACATTTTGCATTACAGACGAGTTTGAACGAGGCATCTGTGATGACTGAATTCATTCGAGCTGTTAAGAAACGAAGAGAGTGA 840 42.38 MRVGVYNILLDIYWSSTSVKLDSTEASKIYNVLLISKRGLLVIIAQVELEFLHYMDHRLQKFCASNIQSPFREESGDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNENDEHDLDNSSCSSDIGEKDNDFSSSVVFHKLSKPKVRQIKPWAPSSSAKSTGRGSYGEIQSIHMPKSGTRVKLGKLGTESLWRYIKHFNLVNSISNTSRDQILQVVQRHFALQTSLNEASVMTEFIRAVKKRRE* 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17044264 17047500 - Chy7G140550.1 Chy07g01225 231236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01225 279 MobiDBLite consensus disorder prediction 142 159 - -
Chy07g01225 279 MobiDBLite consensus disorder prediction 139 159 - -
Chy07g01225 279 MobiDBLite consensus disorder prediction 188 202 - -
Chy07g01225 279 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 221 275 IPR025718 GO:0005515
Chy07g01225 279 PANTHER OS04G0166600 PROTEIN 61 278 - -
Chy07g01225 279 MobiDBLite consensus disorder prediction 184 205 - -
Chy07g01225 279 Gene3D - 201 279 IPR038291 -
Chy07g01225 279 PANTHER SAP30 61 278 IPR024145 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01225 - - - csv:101209634 434.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01484 Chy-Chr3:17284695 Chy07g01225 Chy-Chr7:17044264 1.31E-61 dispersed
Chy07g01225 Chy-Chr7:17044264 Chy04g00534 Chy-Chr4:5325133 2.18E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005484 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01225 Chy_Chr07 FPKM 11.849216 13.433901 15.09659 15.688275 7.273972 7.108033 7.942972 13.199611 13.645633 13.454193