Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01228 ATGGGAGCTGTCGGTGCGGAAGAAATAATGGAAGAGACATCTGGGCGTGACGAGAGAATTTTGGTATCAGTTCGTGTGCGCCCTTTGAACGAGAAGGAGATTTCAAGGAATGACGTTTCGGAATGGGAATGCATCAACGACAACACTGTTATATGCAGGAATGCGCTTTCGGTGGCTGAACGCTCGTATCCATCTGCATATACATTTGACAGGGTATTCGGTTGCGATTGCTCGACAAGGAAGGTCTACGAGGAAGGCGCCAAGGAAGTTGCCCTTTCTGTTGTCAGTGGAGTTAACTCAACTATTTTTGCCTATGGGCAAACAAGCAGCGGGAAAACGTACACCATGAGTGGAATTACGGAGTACACTATCGAAGATATATATGACTACATAGAGAAGCATACGGAGAGGGAGTTTTTCTTGAAGTTCTCTGCCATAGAGATATATAATGAATCTGTGAGGGACCTCCTTAGCGTAGACAGTTCTCCTCTTAGACTCCTGGATGATCCAGAGAGGGGAACCACAGTTGAGAAACTAACGGAGGAAACTCTGAGGGACTGGAATCATTTTAGACAGCTTTTATCTCTTTGCGAAGCTCAAAGGCAGATAGGGGAGACGTCTTTGAACGAAGCAAGCTCCAGATCTCATCAGATTCTTAGATTGACAATTGAGAGCTCGGCTCGTGAATTTTTAGGCAAGGACAAATCGAGTTCTCTCACTGCTACTGTGAATTTTGTCGATCTGGCTGGAAGTGAGCGCGCATCTCAGTCGTTATCAGCTGGTGCACGTCTGAAAGAAGGTTGTCACATAAATCGTAGTTTGCTTACTCTTGGGACTGTTATTCGTAAGCTCAGCAAGGGAAGAAATGGACACATTCCTTTCAGGGATTCGAAGTTGACTCGTATATTGCAATCTTCCTTGGGAGGCAATGCCAGAACTGCCATCATCTGTACCATGAGCCCTGCTCAAATCCATGTTGAGCAATCAAGAAACACACTGTTTTTTGCAAATTGTGCTAAAGAAGTTGTTACTAATGCTCAGGTAAACGTAGTCGTGTCTGATAAGGCACTGGTAAAACAATTGCAAAGAGAATTGGCGAGATTGGAAAGTGAGTTAAAAAGCTCTGTGCAAACTTCTGGAACACCTGATTTCGCATTAATTAGAGAAAAAGATCTTCAGATTGAAAAGCTTAAAAAGGACTTAAGAGAGCTTACCTTGGAACGGGACCATGCACAATCTCAGGTTAAGGATCTGCTTAAAATGGTTGAAGATGATAAACCTTTAATATCATCGACAGATTTGGATGATCAGTATCCAAGATTACGGGTGCGGTCATCATGGGATTTTGAGAATCGCCCATCTCAGAAAACAGTAATGACAGAATCTCGAATCATCTGTGATGTTTCTGGATCTTTTAACGCTTCTCAGTATTCAGGTGGACATAACATTAGTTTCGCTGATAATTTTATGCATCTTGTCGAAGTTGAAAAGGATTTCCTGCAAGGCAAATCCCCTCAACGAGTATCATCGGTGGTTTCCTCTTTGGTCGATACTCAACAAAATCTTGCCGAAGTTGAAGAACTGTCTTATGAGAACTCTGAGGACATCTGTAAGGAAGTTAGATGTATTGAGATGGAAGAATCAAGTATGAATCGATACTTAGTTTCTACCATGTCAGATTCCAGCCCAGAAAGTTACGTTAATTCTGGCCCAGAAAGATATGTTAATTCTGGCCCAGAAAGATATGTTAATTCTACCACTCCGTTACCTGTAGCAAACACAACCACCTCGAAAGTAGTTGATAATGGACAAAGTAAAGAATGTAAATTAGAATCATCCCCTGCAGAAGAAGATAGTAAGTCTAACAACTTCAGTCCTTTCTATGTAATCCTATCCCCGGAGAAACCTTCTCCATGGAATATGGACAAAGATATCTGTAACTCTGGACGATTAAACCTAACTAGGAGTAGAAGTTGTAAAGCCACTATTATGAGAACCTTATCTTCGGAGCATATCAAGGAATTCCAGAGCACACCACCAATTTGGCTTGGAAAAGACTTCGTAGGGAGACCTGAGAGCTTCCAATTAAATCTTCATACATTGAAATATGATGTTGAGTCTGAGAGGTCGTCACTAACTCGTTCTCAAACTTCCCAGAAGAGTGCTTCCAAAGATGCGCATATTGAACAGAATTTTGATGTGTTCGAAGATGACAAAAGTGATGTGACTACTTCAGCAACAGAACTAGAACATGACCGGCTATCCAATTTTGAGAGAGAAAATCAACTTCTTGATGTAGCAAAGCAGATATCCAATCTTAACAGTGAAAATCATCTTCTTGATGCAGCGGTGCTTGAGGCTCAGTCAAATTCCATTGAATCTGAGAAGAATGTGGAAGATGTTGGCGTGGATCCAATCCATAATAACAACATGATAAGTCCTTCAAAATGGCCTTCGGAATTTAGAAGACTTCAAAAAGACATCATTGAACTGTGGCATATTTGTAACGTCTCATTGGTGCATAGGACCTACTTTTTTCTTCTATTTCAAGGTGGCGATCCAGCTGATTCCATTTACATGGAGGTTGAGTTGAGAAGACTATCCTTTCTTAGAGACACATTTTGTCGAGGAAATCCTACTGTCAGAAACGGTGAAACACTGACACAAGCATTGAGTTTGAAATCACTTCACCGGGAGAGACAAATGTTGTGCAAACAAATGGAGAAGAAACTGTCAAAGAAACAAAGAGAGAGCCTATTTGTAGAATGGGGCATTGGATTGAATTCTAACAATAGAAGATTGCAATTGGCTCATCTTGTGTGGAACGATGCAAAAGATATGGATCACATAAGAAAGAGCGCAGCCATTGTTGCAAAACTTGTTAACTACGTAGAACCAGATCAAGCCTCCAAAGAGATGTTTGGTCTTAATTTCACACCACGCCACGATGCTCCAGGAATCGCCTCCTTGGAGACCAAACATGAAGATTCTGGTTGTTGTGCAGCCATGGCTATGCAGCAGCAACACCTTGATAAGATGCAACTCCGCCAGAACTACCGTAATCTCTGGCACACTGATCTAATGCGTACCATTCAGGCTGACACTTCATATTGCTGCTTTGCGTTGTGGTGTGGGCCTTGTGTATCGTATTTGCTTCGTAAAAGAGCTTTATACAATGACATGTCAAGATATGTGTGCTGTGCAGGCTATATGCCTTGTAGTGGTAGGTGTGGAGAAAGTAAATGCCCTGAATTTTGTCTGTGCACAGAGGTTTTCCTCTGCTTTGGGAATTCAGTGGCCTCAACTCGATTTCTGTTGCAAGATGAATTCAACATACAGACAACACAATGCGATAATTGCATTATCGGTTTTATGTTCTGCCTACAACAAATAGCTTGCATATTTTCCATCGTTGCTTTGATAGTAGGAAGTGAAGAAATTCAAGAGGCTTCACAGCTGCTCTCTTGCTTGGCTGATATGGTTTATTGCTCGGTTTGCGCATGTATGCAGACTCAACACAAAATTGAGATGGATAAGAGAGATGGGATGTTCGGAACACAAGTAATGGCAGTGCCTCCTGCTCAATATATGTCACGGATCGATCAGCCAATTCCTCCCTCAGTTGGATATCCACCACAACCTGCATATGGACAGCCCTATGCACCTCAGCCTCAAGGCTATCCAGCTCCGGGATATCCACAACCAGGTTATCCCCCTACTGGATATAGGTAA 3732 42.2 MGAVGAEEIMEETSGRDERILVSVRVRPLNEKEISRNDVSEWECINDNTVICRNALSVAERSYPSAYTFDRVFGCDCSTRKVYEEGAKEVALSVVSGVNSTIFAYGQTSSGKTYTMSGITEYTIEDIYDYIEKHTEREFFLKFSAIEIYNESVRDLLSVDSSPLRLLDDPERGTTVEKLTEETLRDWNHFRQLLSLCEAQRQIGETSLNEASSRSHQILRLTIESSAREFLGKDKSSSLTATVNFVDLAGSERASQSLSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPAQIHVEQSRNTLFFANCAKEVVTNAQVNVVVSDKALVKQLQRELARLESELKSSVQTSGTPDFALIREKDLQIEKLKKDLRELTLERDHAQSQVKDLLKMVEDDKPLISSTDLDDQYPRLRVRSSWDFENRPSQKTVMTESRIICDVSGSFNASQYSGGHNISFADNFMHLVEVEKDFLQGKSPQRVSSVVSSLVDTQQNLAEVEELSYENSEDICKEVRCIEMEESSMNRYLVSTMSDSSPESYVNSGPERYVNSGPERYVNSTTPLPVANTTTSKVVDNGQSKECKLESSPAEEDSKSNNFSPFYVILSPEKPSPWNMDKDICNSGRLNLTRSRSCKATIMRTLSSEHIKEFQSTPPIWLGKDFVGRPESFQLNLHTLKYDVESERSSLTRSQTSQKSASKDAHIEQNFDVFEDDKSDVTTSATELEHDRLSNFERENQLLDVAKQISNLNSENHLLDAAVLEAQSNSIESEKNVEDVGVDPIHNNNMISPSKWPSEFRRLQKDIIELWHICNVSLVHRTYFFLLFQGGDPADSIYMEVELRRLSFLRDTFCRGNPTVRNGETLTQALSLKSLHRERQMLCKQMEKKLSKKQRESLFVEWGIGLNSNNRRLQLAHLVWNDAKDMDHIRKSAAIVAKLVNYVEPDQASKEMFGLNFTPRHDAPGIASLETKHEDSGCCAAMAMQQQHLDKMQLRQNYRNLWHTDLMRTIQADTSYCCFALWCGPCVSYLLRKRALYNDMSRYVCCAGYMPCSGRCGESKCPEFCLCTEVFLCFGNSVASTRFLLQDEFNIQTTQCDNCIIGFMFCLQQIACIFSIVALIVGSEEIQEASQLLSCLADMVYCSVCACMQTQHKIEMDKRDGMFGTQVMAVPPAQYMSRIDQPIPPSVGYPPQPAYGQPYAPQPQGYPAPGYPQPGYPPTGYR* 1244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17059251 17073579 - Chy7G140580.1 Chy07g01228 231239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01228 1243 ProSiteProfiles Kinesin motor domain profile. 19 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01228 1243 MobiDBLite consensus disorder prediction 1205 1243 - -
Chy07g01228 1243 CDD KISc_CENP_E 20 342 - -
Chy07g01228 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 373 IPR027417 -
Chy07g01228 1243 ProSitePatterns Kinesin motor domain signature. 241 252 IPR019821 GO:0003777|GO:0005524|GO:0007018
Chy07g01228 1243 Coils Coil 387 421 - -
Chy07g01228 1243 MobiDBLite consensus disorder prediction 1203 1243 - -
Chy07g01228 1243 Pfam Kinesin motor domain 25 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01228 1243 PANTHER KINESIN-LIKE PROTEIN KIN-7H 11 983 - -
Chy07g01228 1243 Coils Coil 351 378 - -
Chy07g01228 1243 PRINTS Kinesin heavy chain signature 206 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01228 1243 PRINTS Kinesin heavy chain signature 292 313 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01228 1243 PRINTS Kinesin heavy chain signature 97 118 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01228 1243 PRINTS Kinesin heavy chain signature 242 260 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01228 1243 PANTHER CENTROMERE PROTEIN E 11 983 - -
Chy07g01228 1243 Pfam Domain of unknown function (DUF3490) 820 981 IPR021881 -
Chy07g01228 1243 SMART kinesin_4 17 350 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy07g01228 1243 Gene3D Kinesin motor domain 10 373 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01228 K11498 CENPE; centromeric protein E - csv:101218717 1884.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00138 Chy-Chr1:944978 Chy07g01228 Chy-Chr7:17059251 9.41E-06 dispersed
Chy03g01407 Chy-Chr3:16810914 Chy07g01228 Chy-Chr7:17059251 0 dispersed
Chy07g01228 Chy-Chr7:17059251 Chy12g01421 Chy-Chr12:18269722 1.08E-36 dispersed
Chy07g01228 Chy-Chr7:17059251 Chy01g00742 Chy-Chr1:5441917 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g203 . . . Bda08g00756 . Bpe07g00255 . . . Cmo16g01268 Cma02g00912 . Car02g00663 . . Cpe14g01011 . . . . . . . . Cla07g00789 Cam07g0852 Cec07g0905 Cco07g0887 Clacu07g0827 Cmu07g0830 Cre07g1188 . . . . Lsi07g01120 . . Cme07g01644 . . . . . . . Bma12g00444 . Cmo02g00919 . . Cma16g01224 . Car16g01152 Cpe08g00909 . . . . . . . . . . . . . . . . . Chy07g01228 .
Vvi4g1085 . . . . . . . . Cmo04g00793 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0729 Cone6ag1670 Cone9ag1592 . . Chy07g01228 . Blo05g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00582 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005179 0 5 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 0 1 1 6 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01228 Chy_Chr07 FPKM 26.189793 25.599163 5.4116 5.795307 3.29069 2.344484 2.873154 12.638335 11.807681 11.27683