Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01229 ATGAGAACACTTTGTGACGCTTGTGAAAAGGCTGCTGCTATTGTCTTTTGTGCTGCTGATGAAGCCGCCCTTTGCCGCTCTTGTGACGAGAAGGTTCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGTGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTTGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCCAAGGTTCCTAATGAGATTGGTAAAGTACATAACCAGCCACCTCTGCATAAAGTGACAGTAGAAGACAACCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCCAACGATGATGGTCATGCTGAGACTGATACGAAAATGATCGATTTGAATATGAAGCCTCATAGGGTCCATGGCCAGGCTGCTAATAATCAGATTTCCATCAAGAATAATGGGGAAGATTCTGACGACTGCTCGTTTATGGTTGGTGATGATGGCGCTGGCGTTTTCTTCTCCCGCGTTCATAACCGCCCACGTTACTCCTCGCACTCTACTTCATCGGTTGTCTTCAACCAGCTCGTTCTTAACCCGGACGGAGCTTTGAATCATGATAAGTTTCAGCAGCGCTATTATGAGTTCCTTGACTACTTTCGGATTCCAGATGGTCCGATATTTTTAAAAATTTGTGGTGAAGGCCCGTGCAATGGGATAAGCAATGATTACCTTGGTGTTTTGGCAAAGAAATTTGGAGCAGCTATTGTTTCTCTTGAGCATCGCTACTATGGGAAGAGTTCCCCTTTCAAGTCATTGACGACAAATAACTTGAGATATCTTTCGTCCAAGCAAGCTTTGTTTGATTTGGCCGTTTTCCGTCAGTACTATCAGGATTCATTAAATTTGAAGTTGAACAAGAAGGGTGAAAACCCATGGTTCTTTTTTGGTGTCTCATATCCTGGAGCTCTTAGTGCATGGTTTCGACTTAAGTTCCCTCATTTAACATGTGGAAGTCTTGCAAGTTCTGCTGTTGTACTTGCTGTCTATAACTTTACTGAATTTGACCAACAGATTGGTGAGTCTGCTGGGCCAGAGTGCAAGGCTGTTTTACAAGAAACCAATCGACTTGTTGAACAAAGATTTGAAACAAACAAAAAAGAAGTGAAAGCATTGTTTGGTGCGGGAGAGCTGGAAATAGATGGAGATTTCTTTTACCTTCTGGCAGATGCGGCTGTCATAGCGTTTCAATATGGGAATCCAGATACATTATGCTCTCCTCTTGTTCAAGCAAAGAATGCGGGAAATGACTTAGTGGATGCCTATGCCAAATATGTTAAAGATTATTACATTGGAAGTTTTGGCTCTAGTGTTCAGACTTACAATCAGAAATATTTAAAAAACACCAGTCCAGGTGAAGATAGCGCGGACCGGTTGTGGTGGTTTCAAGTTTGTACTGAAGTTGCATATTTCCAGGTTGCTCCAGCAAATGATAGCATGCGTTCATCTAAAGTGGATGCAAAATATCATCTGGATCTTTGTAAGAACGTTTTTGGAGAGGGTGTCTATCCGGATGTAGACACCACAAATATTTATTATGGAGGCACAGGAATTGCAGGTTCAAAAATAGTTTTTACAAATGGTTCACAAGATCCTTGGCGCCATGCATCCAAGCAAATATCATCTCCAGAGATGCCATCATTCCTCATGACATGTCACAATTGTGGCCATGGAACTGATTTGCGAGGATGCCCTCAATCTCATCTTAACATTGAAGGTAATGCTCAAAACTGTAGTTCTCCCGATGCAGTTCACAAAGTTAGGCAGCAGTTGGTGGAAAAAATGGATCTTTGGCTGTCAGAATGTCAATCCACCACTGGTAGGAATTATATTTGA 2004 42.27 MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPLHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQAANNQISIKNNGEDSDDCSFMVGDDGAGVFFSRVHNRPRYSSHSTSSVVFNQLVLNPDGALNHDKFQQRYYEFLDYFRIPDGPIFLKICGEGPCNGISNDYLGVLAKKFGAAIVSLEHRYYGKSSPFKSLTTNNLRYLSSKQALFDLAVFRQYYQDSLNLKLNKKGENPWFFFGVSYPGALSAWFRLKFPHLTCGSLASSAVVLAVYNFTEFDQQIGESAGPECKAVLQETNRLVEQRFETNKKEVKALFGAGELEIDGDFFYLLADAAVIAFQYGNPDTLCSPLVQAKNAGNDLVDAYAKYVKDYYIGSFGSSVQTYNQKYLKNTSPGEDSADRLWWFQVCTEVAYFQVAPANDSMRSSKVDAKYHLDLCKNVFGEGVYPDVDTTNIYYGGTGIAGSKIVFTNGSQDPWRHASKQISSPEMPSFLMTCHNCGHGTDLRGCPQSHLNIEGNAQNCSSPDAVHKVRQQLVEKMDLWLSECQSTTGRNYI* 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17084276 17095300 + Chy7G140590.1 Chy07g01229 231240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01229 667 Gene3D Classic Zinc Finger 2 95 - -
Chy07g01229 667 PANTHER OS10G0511600 PROTEIN 240 661 - -
Chy07g01229 667 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 240 661 - -
Chy07g01229 667 SUPERFAMILY alpha/beta-Hydrolases 254 448 IPR029058 -
Chy07g01229 667 MobiDBLite consensus disorder prediction 140 159 - -
Chy07g01229 667 Pfam Serine carboxypeptidase S28 241 602 IPR008758 GO:0006508|GO:0008236
Chy07g01229 667 SMART bboxneu5 1 47 IPR000315 GO:0008270
Chy07g01229 667 SMART bboxneu5 51 96 IPR000315 GO:0008270
Chy07g01229 667 CDD Bbox1_BBX-like 4 47 - -
Chy07g01229 667 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Chy07g01229 667 CDD Bbox1_BBX-like 56 96 - -
Chy07g01229 667 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Chy07g01229 667 Gene3D alpha/beta hydrolase 474 659 IPR029058 -
Chy07g01229 667 Gene3D alpha/beta hydrolase 222 455 IPR029058 -
Chy07g01229 667 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01411 Chy-Chr3:16842241 Chy07g01229 Chy-Chr7:17084276 1.25E-22 dispersed
Chy07g01229 Chy-Chr7:17084276 Chy11g00860 Chy-Chr11:12052677 1.50E-24 dispersed
Chy04g01899 Chy-Chr4:25042990 Chy07g01229 Chy-Chr7:17084276 9.47E-27 transposed
Chy05g01264 Chy-Chr5:16986842 Chy07g01229 Chy-Chr7:17084276 5.98E-27 transposed
Chy12g00746 Chy-Chr12:11438506 Chy07g01229 Chy-Chr7:17084276 8.16E-10 transposed
Chy02g00591 Chy-Chr2:3597169 Chy07g01229 Chy-Chr7:17084276 5.94E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18333 PF05577 Peptidase_S28 1.90E-71 CL0028 Chy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01229 - - csv:101207265 892.108