Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01229 ATGAGAACACTTTGTGACGCTTGTGAAAAGGCTGCTGCTATTGTCTTTTGTGCTGCTGATGAAGCCGCCCTTTGCCGCTCTTGTGACGAGAAGGTTCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGATGTTCCCCGTTGTGATATATGTGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTTGAGTTTCCAGGAGACAAACCTATAAATCTTGATGATCCATCTCCACATTCCAAGGTTCCTAATGAGATTGGTAAAGTACATAACCAGCCACCTCTGCATAAAGTGACAGTAGAAGACAACCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCCAACGATGATGGTCATGCTGAGACTGATACGAAAATGATCGATTTGAATATGAAGCCTCATAGGGTCCATGGCCAGGCTGCTAATAATCAGATTTCCATCAAGAATAATGGGGAAGATTCTGACGACTGCTCGTTTATGGTTGGTGATGATGGCGCTGGCGTTTTCTTCTCCCGCGTTCATAACCGCCCACGTTACTCCTCGCACTCTACTTCATCGGTTGTCTTCAACCAGCTCGTTCTTAACCCGGACGGAGCTTTGAATCATGATAAGTTTCAGCAGCGCTATTATGAGTTCCTTGACTACTTTCGGATTCCAGATGGTCCGATATTTTTAAAAATTTGTGGTGAAGGCCCGTGCAATGGGATAAGCAATGATTACCTTGGTGTTTTGGCAAAGAAATTTGGAGCAGCTATTGTTTCTCTTGAGCATCGCTACTATGGGAAGAGTTCCCCTTTCAAGTCATTGACGACAAATAACTTGAGATATCTTTCGTCCAAGCAAGCTTTGTTTGATTTGGCCGTTTTCCGTCAGTACTATCAGGATTCATTAAATTTGAAGTTGAACAAGAAGGGTGAAAACCCATGGTTCTTTTTTGGTGTCTCATATCCTGGAGCTCTTAGTGCATGGTTTCGACTTAAGTTCCCTCATTTAACATGTGGAAGTCTTGCAAGTTCTGCTGTTGTACTTGCTGTCTATAACTTTACTGAATTTGACCAACAGATTGGTGAGTCTGCTGGGCCAGAGTGCAAGGCTGTTTTACAAGAAACCAATCGACTTGTTGAACAAAGATTTGAAACAAACAAAAAAGAAGTGAAAGCATTGTTTGGTGCGGGAGAGCTGGAAATAGATGGAGATTTCTTTTACCTTCTGGCAGATGCGGCTGTCATAGCGTTTCAATATGGGAATCCAGATACATTATGCTCTCCTCTTGTTCAAGCAAAGAATGCGGGAAATGACTTAGTGGATGCCTATGCCAAATATGTTAAAGATTATTACATTGGAAGTTTTGGCTCTAGTGTTCAGACTTACAATCAGAAATATTTAAAAAACACCAGTCCAGGTGAAGATAGCGCGGACCGGTTGTGGTGGTTTCAAGTTTGTACTGAAGTTGCATATTTCCAGGTTGCTCCAGCAAATGATAGCATGCGTTCATCTAAAGTGGATGCAAAATATCATCTGGATCTTTGTAAGAACGTTTTTGGAGAGGGTGTCTATCCGGATGTAGACACCACAAATATTTATTATGGAGGCACAGGAATTGCAGGTTCAAAAATAGTTTTTACAAATGGTTCACAAGATCCTTGGCGCCATGCATCCAAGCAAATATCATCTCCAGAGATGCCATCATTCCTCATGACATGTCACAATTGTGGCCATGGAACTGATTTGCGAGGATGCCCTCAATCTCATCTTAACATTGAAGGTAATGCTCAAAACTGTAGTTCTCCCGATGCAGTTCACAAAGTTAGGCAGCAGTTGGTGGAAAAAATGGATCTTTGGCTGTCAGAATGTCAATCCACCACTGGTAGGAATTATATTTGA 2004 42.27 MRTLCDACEKAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNEIGKVHNQPPLHKVTVEDNQQNHHRLSPVREANDDGHAETDTKMIDLNMKPHRVHGQAANNQISIKNNGEDSDDCSFMVGDDGAGVFFSRVHNRPRYSSHSTSSVVFNQLVLNPDGALNHDKFQQRYYEFLDYFRIPDGPIFLKICGEGPCNGISNDYLGVLAKKFGAAIVSLEHRYYGKSSPFKSLTTNNLRYLSSKQALFDLAVFRQYYQDSLNLKLNKKGENPWFFFGVSYPGALSAWFRLKFPHLTCGSLASSAVVLAVYNFTEFDQQIGESAGPECKAVLQETNRLVEQRFETNKKEVKALFGAGELEIDGDFFYLLADAAVIAFQYGNPDTLCSPLVQAKNAGNDLVDAYAKYVKDYYIGSFGSSVQTYNQKYLKNTSPGEDSADRLWWFQVCTEVAYFQVAPANDSMRSSKVDAKYHLDLCKNVFGEGVYPDVDTTNIYYGGTGIAGSKIVFTNGSQDPWRHASKQISSPEMPSFLMTCHNCGHGTDLRGCPQSHLNIEGNAQNCSSPDAVHKVRQQLVEKMDLWLSECQSTTGRNYI* 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17084276 17095300 + Chy7G140590.1 Chy07g01229 231240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01229 667 Gene3D Classic Zinc Finger 2 95 - -
Chy07g01229 667 PANTHER OS10G0511600 PROTEIN 240 661 - -
Chy07g01229 667 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 240 661 - -
Chy07g01229 667 SUPERFAMILY alpha/beta-Hydrolases 254 448 IPR029058 -
Chy07g01229 667 MobiDBLite consensus disorder prediction 140 159 - -
Chy07g01229 667 Pfam Serine carboxypeptidase S28 241 602 IPR008758 GO:0006508|GO:0008236
Chy07g01229 667 SMART bboxneu5 1 47 IPR000315 GO:0008270
Chy07g01229 667 SMART bboxneu5 51 96 IPR000315 GO:0008270
Chy07g01229 667 CDD Bbox1_BBX-like 4 47 - -
Chy07g01229 667 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Chy07g01229 667 CDD Bbox1_BBX-like 56 96 - -
Chy07g01229 667 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Chy07g01229 667 Gene3D alpha/beta hydrolase 474 659 IPR029058 -
Chy07g01229 667 Gene3D alpha/beta hydrolase 222 455 IPR029058 -
Chy07g01229 667 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01229 - - - csv:101207265 892.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01411 Chy-Chr3:16842241 Chy07g01229 Chy-Chr7:17084276 1.25E-22 dispersed
Chy07g01229 Chy-Chr7:17084276 Chy11g00860 Chy-Chr11:12052677 1.50E-24 dispersed
Chy04g01899 Chy-Chr4:25042990 Chy07g01229 Chy-Chr7:17084276 9.47E-27 transposed
Chy05g01264 Chy-Chr5:16986842 Chy07g01229 Chy-Chr7:17084276 5.98E-27 transposed
Chy12g00746 Chy-Chr12:11438506 Chy07g01229 Chy-Chr7:17084276 8.16E-10 transposed
Chy02g00591 Chy-Chr2:3597169 Chy07g01229 Chy-Chr7:17084276 5.94E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1082 . Blo16g00073 . . . Bpe13g00424 . . Cmo04g00795 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1667 Cone9ag1589 . . Chy07g01229 . . . Bda11g01844 . . . . Bma06g00104 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00580 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01067 . 6 328 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 2.1e-38 156.8
Chy03g01067 . 1 320 C2C2-CO-like Transcription Factor Family AT5G24930 63.2 4.5e-81 298.5
Chy02g02192 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.9 5.3e-58 221.9
Chy02g02192 . 1 376 C2C2-CO-like Transcription Factor Family AT5G57660 52.1 1.0e-69 260.8
Chy02g02191 CCT 15 366 C2C2-CO-like Transcription Factor Family AT5G57660 50.6 3.1e-58 222.6
Chy03g01067 . 2 331 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.6e-52 201.8
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 7.1e-90 327.8
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 6.0e-89 324.7
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT1G75540 65.9 2.4e-41 166.4
Chy07g00978 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.5 1.1e-78 290.4
Chy07g01229 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 60.9 3.4e-55 211.5
Chy02g00591 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Chy07g01229 . 1 201 C2C2-CO-like Transcription Factor Family AT4G38960 60.2 2.3e-57 218.8
Chy02g00591 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT4G39070 67.7 2.6e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003706 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 2 7 2 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18333 PF05577 Peptidase_S28 1.90E-71 CL0028 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01229 Chy_Chr07 FPKM 1.099375 0.990924 1.929223 1.876766 1.914891 1.457354 2.220538 0.0811 0.034365 0.144825