Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01232 ATGCGTTCGTCCAGCAAATCGGTGAGTTCCCTTTTCAACACTTTTGTTATTTGCTATATTGCTGAGGAAGTTCATTTGACTTTCTTACGAAACTTCGAGTGTTATAGTCAAAGATACCGGGGTGTTGCTGTTGCAAGTCTGAGTGGAGATTTTGCTACTTTGGGGGTGAGTGTTACTGAAGGCGAAGGAAGTTTACCCAAGGTTGTGCTCACTTCTCCGAGTGGCAGTGAGGCTGATGTATATTTGTATGGAGGATGCATTACATCTTGGAGACTCGCTAATGGGAAGGATCTCCTGTTTGTTCGCCCGGATGCTGTTTTTAACAAGAAGAAACCAATCAGTGGAGGCATTCCACATTGTTTCCCACAATTTGGACCTGGCTCTATTCAACAGCATGGATTTGCAAGAAACGTGGACTGGTCTGTCTTTGATTCTGGAAGTGTTGAAGGCAACCCAGGTGTAACTCTTGAACTAAAGGATGATTCATATAGTCGTTCCATGTGGGATTTCAGTTTTCATGCTCTGTACAAGATTATTTTGAGTGAAAGGAGCCTTTCCACTGAGCTAATAATTAAGAATACTGACAAGAAGCCATTTTCATTTACTACGGCATTGCATACATACTTTCATGCTTCTATAAGTGGAGTAAAAGTTGGGGGATTGAAGGGTTGTAAAACATTGAACAAAGATCCAGATCCCACCAATCCATTGGAGGGTGTGGAAGAAAGGGACGTGGTTAGTTTTCCTGGATTTGTTGATTGTGTTTATCTTGATGCACCTGGAGAATTGAATCTGGATAATGGATTGGGTGACAACATACTTATCAACAATACAAATTGGTCCGATGCAGTGTTATGGAACCCGCATTTGCAGATGGAAGCATGCTATAGGGATTTCGTTTGTGTTGAGAATGCTAAGATAAGGAAGGTCCAGCTAGAGCCTGATCAATCTTGGACAGCGACGCAGGAGCTTAGAATTACTTGA 984 42.17 MRSSSKSVSSLFNTFVICYIAEEVHLTFLRNFECYSQRYRGVAVASLSGDFATLGVSVTEGEGSLPKVVLTSPSGSEADVYLYGGCITSWRLANGKDLLFVRPDAVFNKKKPISGGIPHCFPQFGPGSIQQHGFARNVDWSVFDSGSVEGNPGVTLELKDDSYSRSMWDFSFHALYKIILSERSLSTELIIKNTDKKPFSFTTALHTYFHASISGVKVGGLKGCKTLNKDPDPTNPLEGVEERDVVSFPGFVDCVYLDAPGELNLDNGLGDNILINNTNWSDAVLWNPHLQMEACYRDFVCVENAKIRKVQLEPDQSWTATQELRIT* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17116820 17121700 + Chy7G140620.1 Chy07g01232 231243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01232 327 Pfam Aldose 1-epimerase 67 324 IPR008183 GO:0005975|GO:0016853
Chy07g01232 327 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 38 326 - -
Chy07g01232 327 CDD D-hex-6-P-epi_like 67 325 IPR025532 -
Chy07g01232 327 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 38 326 - -
Chy07g01232 327 Gene3D - 64 326 IPR014718 GO:0030246
Chy07g01232 327 SUPERFAMILY Galactose mutarotase-like 68 324 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01232 K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] - csv:101207518 569.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00124 Chy-Chr6:824658 Chy07g01232 Chy-Chr7:17116820 1.32E-38 dispersed
Chy07g01178 Chy-Chr7:16626002 Chy07g01232 Chy-Chr7:17116820 1.99E-40 dispersed
Chy07g01232 Chy-Chr7:17116820 Chy05g00889 Chy-Chr5:13166070 4.18E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g989 . Blo16g00050 . . . Bpe13g00440 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0817 . . . . . Chy07g01232 . . . Bda11g01861 . . . . Bma06g00118 . . . . . . . . Cpe14g00477 . . . . . . . . . . . . . . . Csa04g00577 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010275 1 3 1 0 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 1 1 0 1 1 1 0 1 2 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01232 Chy_Chr07 FPKM 1.408842 1.231217 1.632523 1.199366 5.262552 4.942749 4.512633 1.630759 1.702751 1.437486