Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01233 ATGAATAGGAGAAGTTTTGCTTTTAGGGGAATTGTGGCTTCTGGAGTTTCTGTTATGGGCTCCTCTGCGGTTATACAGCGTGCTCAAGGGATGGAAAGATTACTATTCAAACCAGAAGGTTATAACTTCTGGACATGGCGGGGTCACAAGATACATTATGTTGTACAAGGAGAAGGTCCTCCGATAGTTCTTATACATGGTTTTGGTGCTTCTGTATTTCATTGGAGGTATAACATACCAGAGCTGGCTAAGAAGTACAAGGTCTATGCCTTAGACTTGCTGGGATTTGGGTGGAGTGATAAAGCACTTATTGAGTACGATGCCATGGTCTGGAGGGACCAAGTTGTCGATTTTATGAAGGAAGTAGTGAAACAGCCTGCAGTTTTAGTTGGGAACAGCCTTGGAGGGTTTACTGCCTTGGTTTCTGCAGCAGGGTTGCCGGAGCAAGTTCGTGGAGTTGTATTACTAAACTCCGCTGGGCAGTTTGGAGATGTAAATAAGTTGACAGAAGAGCCAGAAGAAACCAGCTTCCAGAAGTTCATTTTGAAGCCGCTGAAGGATTTTTTTCAGCGAATCTTTCTTGGAGTTCTTTTCTGGCAAACCAAGCAACCAGCTAGAATTGTTTCTGTTTTGAAGAGTGTATACATAAATTCTGAAAATGTGGATGATTATCTGGTAGAGTCTATATCGATTCCAGCAGCTGATCCGAATGCTAGAGAAGTTTACTACAGATTGATGACAAGATTCATGTTCAATCAAAGCAAATATACTCTAAACAGTGTATTGAGTGAGCTGCGTTGTCCACTGTTGTTGTTGTGGGGTGATTTGGATCCATGGGTTGGTCCTGCTAAGGCCAACAGAATCAAAGAATTTTATCCCAACACAACTCTTGTAAATTTGAAAGCAGGGCATTGCCCACATGATGAAGTTCCTGAGCTTGTCAATTCTGCTTTGATGGATTGGCTAGCAACTCTACAACAACCTCAACCAACACTCTGA 999 42.44 MNRRSFAFRGIVASGVSVMGSSAVIQRAQGMERLLFKPEGYNFWTWRGHKIHYVVQGEGPPIVLIHGFGASVFHWRYNIPELAKKYKVYALDLLGFGWSDKALIEYDAMVWRDQVVDFMKEVVKQPAVLVGNSLGGFTALVSAAGLPEQVRGVVLLNSAGQFGDVNKLTEEPEETSFQKFILKPLKDFFQRIFLGVLFWQTKQPARIVSVLKSVYINSENVDDYLVESISIPAADPNAREVYYRLMTRFMFNQSKYTLNSVLSELRCPLLLLWGDLDPWVGPAKANRIKEFYPNTTLVNLKAGHCPHDEVPELVNSALMDWLATLQQPQPTL* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17123682 17126532 + Chy7G140630.1 Chy07g01233 231244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01233 332 Pfam Alpha/beta hydrolase family 62 316 IPR000073 -
Chy07g01233 332 PANTHER PHEOPHYTINASE, CHLOROPLASTIC-LIKE ISOFORM X1 1 326 - -
Chy07g01233 332 SUPERFAMILY alpha/beta-Hydrolases 42 322 IPR029058 -
Chy07g01233 332 Gene3D alpha/beta hydrolase 40 326 IPR029058 -
Chy07g01233 332 PRINTS Alpha/beta hydrolase fold signature 143 156 IPR000073 -
Chy07g01233 332 PRINTS Alpha/beta hydrolase fold signature 129 142 IPR000073 -
Chy07g01233 332 PRINTS Alpha/beta hydrolase fold signature 85 100 IPR000073 -
Chy07g01233 332 PRINTS Epoxide hydrolase signature 143 156 IPR000639 GO:0003824
Chy07g01233 332 PRINTS Epoxide hydrolase signature 299 321 IPR000639 GO:0003824
Chy07g01233 332 PRINTS Epoxide hydrolase signature 66 84 IPR000639 GO:0003824
Chy07g01233 332 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01233 - - - csv:101207761 637.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00020 Chy-Chr5:156828 Chy07g01233 Chy-Chr7:17123682 1.61E-46 dispersed
Chy07g00868 Chy-Chr7:11630028 Chy07g01233 Chy-Chr7:17123682 5.30E-13 dispersed
Chy07g01233 Chy-Chr7:17123682 Chy09g00966 Chy-Chr9:12351439 8.06E-39 dispersed
Chy07g01233 Chy-Chr7:17123682 Chy01g01821 Chy-Chr1:23729410 1.39E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g993 Blo04g00911 . . . Bpe15g00423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1635 . . . Chy07g01233 . . . . . . . . . . . . . . . . . Cpe14g00520 . . . . . . . . . . . . . . . Csa04g00575 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010323 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01233 Chy_Chr07 FPKM 1.784141 1.145409 1.953638 1.651972 1.766259 2.433832 2.133545 6.873068 4.771177 5.801514