Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01239 ATGCCGATTCTTCACGGTTTTCCAACGGCGACCACCACGGGATCTGGGGTTTCGATGGTGGTCGGTGGGAGGCTTGATTTTGACAGAAAGCGTGCTTGCTTATGCTGGAGAAAGATGTCGCTTAAAAGCTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCTAAGCGAGGAGAAGAAGGGAGTAGGCATTGGCGAAACCGGACGATGTCACACATTGCACCGGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTTCCCCCTGAATTACTTTTAGACATCATCCGAAGAGTGGAAGAGAGTGAAACCTCGTGGCCTGCACGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGAACCATTACAAAGGAGATTATCAGAACTCCTGAACAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGGTATTGTGGTTTATCCTTCTCCCCCTCTTTTTGGTGAAATCCTTTCATGTTCATGTTCATGTTTTGATTTTCTGTTTACAATTAAAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTCATCAGAAGGGATAGAGCAACTTCAACCTACCTCCTGTACTTTGGTTTGGTTCCTTCGGAGGATGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGGAGAGCAGCTGGTACTGACTTCATCATATCCTTAGCAGCTGATGACTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGACAGCCAGCCTCCTTGTGACCCTGCAGCTCGACAAAATAGCCGGTCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGGGTTCCTGCATGTAACTACAGCGTAGGTACAATATCATATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGAATGCAGTGCATCATGCAAACGATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCATTCACATACTCTCTTGATGACCACCTTTCTTCCATGTCCGATTCTATGAGAAAGGATTCAACAACCAAGGACTTTGGCTCAAAGATCCAATCTGAACCAGCAGTTCGGGCCTCGGATGAATCCTTAGTACTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGAGTGACTGTTGCATCCGTTAAGAACTTTCAACTTGTTGCAGCTGTTGATCAATCTCACAATGTTTCAGTAGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATCGGAAAAGACATCTTCACCATGGATTATCATTACCCCCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGTAGCTTCGACACGAAGCCAGCCTGCGAATGA 1446 45.64 MPILHGFPTATTTGSGVSMVVGGRLDFDRKRACLCWRKMSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRTITKEIIRTPEQCGRLTFPISLKQVLWFILLPLFLVKSFHVHVHVLIFCLQLKPGPRESPFQCFIRRDRATSTYLLYFGLVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSLDDHLSSMSDSMRKDSTTKDFGSKIQSEPAVRASDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17147729 17150364 + Chy7G140690.1 Chy07g01239 231250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01239 481 PANTHER TUBBY-LIKE F-BOX PROTEIN 39 157 - -
Chy07g01239 481 Pfam Tub family 186 476 IPR000007 -
Chy07g01239 481 ProSitePatterns Tub family signature 2. 466 481 IPR018066 -
Chy07g01239 481 SUPERFAMILY Tubby C-terminal domain-like 184 481 IPR025659 -
Chy07g01239 481 Pfam F-box domain 94 140 IPR001810 GO:0005515
Chy07g01239 481 PANTHER TUBBY-RELATED 179 481 - -
Chy07g01239 481 PANTHER TUBBY-LIKE F-BOX PROTEIN 179 481 - -
Chy07g01239 481 PANTHER TUBBY-RELATED 39 157 - -
Chy07g01239 481 MobiDBLite consensus disorder prediction 274 294 - -
Chy07g01239 481 Gene3D Tubby Protein; Chain A 180 481 IPR025659 -
Chy07g01239 481 PRINTS Tubby superfamily signature 238 254 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 409 425 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 391 408 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 303 330 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 254 278 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 459 481 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 438 457 IPR000007 -
Chy07g01239 481 Gene3D - 88 141 - -
Chy07g01239 481 SUPERFAMILY F-box domain 88 138 IPR036047 GO:0005515
Chy07g01239 481 ProSitePatterns Tub family signature 1. 409 422 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01239 K19600 TUB, TULP; tubby and related proteins - csv:101205595 783.867
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g00642 Chy07g01239 CCT
Chy02g00642 Chy07g01239 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00654 Chy-Chr6:4489235 Chy07g01239 Chy-Chr7:17147729 5.15E-144 dispersed
Chy07g00990 Chy-Chr7:14575065 Chy07g01239 Chy-Chr7:17147729 5.24E-109 dispersed
Chy07g01239 Chy-Chr7:17147729 Chy11g01469 Chy-Chr11:21443334 1.15E-147 dispersed
Chy02g00642 Chy-Chr2:3917442 Chy07g01239 Chy-Chr7:17147729 0 wgd
Chy04g00489 Chy-Chr4:4705059 Chy07g01239 Chy-Chr7:17147729 3.92E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g987 . Blo16g00048 . . . . . . . . . Cma07g00481 . Car07g00424 . Cpe19g00814 . Bhi03g01306 . . . Hepe04g1521 . . Cla01g01915 Cam01g2002 Cec04g1658 Cco04g1720 Clacu01g2022 Cmu01g1898 Cre04g1574 . . Cone6ag1629 Cone9ag1554 Lsi01g00669 . Chy07g01239 Cme08g00854 . . Bda11g01863 . . . . . . . Cmo07g00480 . . . . . . . . . . . . . . . . . . . . Lsi07g00258 Csa06g03246 Chy02g00642 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G76900 69.9 1.9e-169 592.4
Chy03g00507 . 1 433 TUB Transcription Factor Family AT1G76900 69.4 4.2e-169 591.3
Chy11g01469 CCT,ECH 13 387 TUB Transcription Factor Family AT1G76900 50.9 7.8e-115 411.0
Chy06g00654 CCT,ECH 13 388 TUB Transcription Factor Family AT1G76900 51.3 1.6e-112 403.3
Chy02g00642 CCT,ECH 38 403 TUB Transcription Factor Family AT1G76900 51.9 1.3e-106 383.6
Chy03g00407 . 1 190 TUB Transcription Factor Family AT1G76900 77.3 5.6e-81 298.5
Chy06g01095 . 174 429 TUB Transcription Factor Family AT1G25280 74.3 5.8e-102 367.5
Chy03g00507 . 175 433 TUB Transcription Factor Family AT1G25280 70.4 2.2e-93 339.0
Chy07g01239 CCT,ECH 244 482 TUB Transcription Factor Family AT1G25280 56.8 4.1e-71 265.0
Chy06g00654 CCT,ECH 154 388 TUB Transcription Factor Family AT1G25280 53.7 9.1e-71 263.8
Chy04g00489 . 180 412 TUB Transcription Factor Family AT1G25280 54.7 2.5e-68 255.8
Chy11g01469 CCT,ECH 154 387 TUB Transcription Factor Family AT1G25280 53.0 7.9e-67 250.8
Chy02g00642 CCT,ECH 164 403 TUB Transcription Factor Family AT1G25280 51.7 8.8e-66 247.3
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT5G18680 62.9 1.9e-98 355.9
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT5G18680 64.0 4.3e-98 354.8
Chy03g00507 . 112 433 TUB Transcription Factor Family AT5G18680 52.9 1.8e-83 306.2
Chy06g01095 . 113 429 TUB Transcription Factor Family AT5G18680 53.0 8.8e-83 303.9
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT5G18680 53.8 3.5e-79 292.0
Chy07g01239 CCT,ECH 39 481 TUB Transcription Factor Family AT2G18280 58.1 1.0e-139 493.4
Chy02g00642 CCT,ECH 7 402 TUB Transcription Factor Family AT2G18280 61.7 1.7e-134 476.1
Chy04g00489 . 1 411 TUB Transcription Factor Family AT2G18280 60.0 1.5e-125 446.4
Chy06g01095 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 2.7e-119 425.6
Chy06g00654 CCT,ECH 1 387 TUB Transcription Factor Family AT2G18280 54.1 1.0e-115 413.7
Chy03g00507 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Chy11g01469 CCT,ECH 1 386 TUB Transcription Factor Family AT2G18280 53.2 2.4e-112 402.5
Chy07g00990 . 50 381 TUB Transcription Factor Family AT2G18280 50.4 1.5e-93 340.1
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G18280 53.1 6.4e-49 191.8
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT2G47900 68.3 7.1e-160 560.5
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT2G47900 68.3 1.3e-158 556.2
Chy06g01095 . 1 429 TUB Transcription Factor Family AT2G47900 56.7 6.9e-131 464.2
Chy03g00507 . 1 433 TUB Transcription Factor Family AT2G47900 56.5 9.1e-131 463.8
Chy07g01239 CCT,ECH 39 482 TUB Transcription Factor Family AT2G47900 52.3 2.3e-118 422.5
Chy04g00489 . 10 412 TUB Transcription Factor Family AT2G47900 55.5 1.5e-117 419.9
Chy02g00642 CCT,ECH 10 403 TUB Transcription Factor Family AT2G47900 52.5 1.4e-110 396.7
Chy07g00990 . 51 381 TUB Transcription Factor Family AT2G47900 51.5 1.6e-98 356.7
Chy03g00407 . 1 190 TUB Transcription Factor Family AT2G47900 56.0 2.1e-58 223.4
Chy01g01931 . 84 299 TUB Transcription Factor Family AT1G16070 62.7 1.5e-74 276.6
Chy06g01095 . 66 429 TUB Transcription Factor Family AT1G43640 68.1 4.7e-147 517.7
Chy03g00507 . 65 433 TUB Transcription Factor Family AT1G43640 65.9 1.0e-141 500.0
Chy11g01469 CCT,ECH 47 387 TUB Transcription Factor Family AT1G43640 52.1 6.9e-106 380.9
Chy06g00654 CCT,ECH 49 388 TUB Transcription Factor Family AT1G43640 53.6 1.2e-105 380.2
Chy04g00489 . 69 412 TUB Transcription Factor Family AT1G43640 50.7 1.6e-99 359.8
Chy02g00642 CCT,ECH 55 403 TUB Transcription Factor Family AT1G43640 50.4 1.2e-94 343.6
Chy03g00407 . 67 190 TUB Transcription Factor Family AT1G43640 79.8 5.5e-55 211.8
Chy04g00489 . 34 412 TUB Transcription Factor Family AT1G47270 64.6 2.2e-134 475.7
Chy02g00642 CCT,ECH 21 403 TUB Transcription Factor Family AT1G47270 57.0 1.1e-120 430.3
Chy07g01239 CCT,ECH 72 482 TUB Transcription Factor Family AT1G47270 54.4 1.3e-118 423.3
Chy06g01095 . 1 429 TUB Transcription Factor Family AT1G47270 52.2 1.1e-114 410.2
Chy03g00507 . 48 433 TUB Transcription Factor Family AT1G47270 53.5 6.9e-112 401.0
Chy11g01469 CCT,ECH 1 387 TUB Transcription Factor Family AT1G47270 50.9 1.0e-107 387.1
Chy06g00654 CCT,ECH 1 388 TUB Transcription Factor Family AT1G47270 50.4 4.0e-104 375.2
Chy03g00407 . 30 190 TUB Transcription Factor Family AT1G47270 54.2 1.7e-46 183.7
Chy07g00990 . 1 381 TUB Transcription Factor Family AT1G53320 71.4 3.2e-154 541.6
Chy11g01469 CCT,ECH 22 387 TUB Transcription Factor Family AT1G53320 50.8 2.0e-103 372.9
Chy06g00654 CCT,ECH 22 388 TUB Transcription Factor Family AT1G53320 50.3 1.9e-98 356.3
Chy06g00654 CCT,ECH 98 388 TUB Transcription Factor Family AT3G06380 64.4 1.8e-96 349.4
Chy11g01469 CCT,ECH 98 387 TUB Transcription Factor Family AT3G06380 62.6 3.3e-95 345.1
Chy06g01095 . 117 429 TUB Transcription Factor Family AT3G06380 54.0 4.2e-82 301.6
Chy03g00507 . 116 433 TUB Transcription Factor Family AT3G06380 52.8 1.8e-80 296.2
Chy07g01239 CCT,ECH 185 482 TUB Transcription Factor Family AT3G06380 53.4 8.8e-80 293.9
Chy04g00489 . 120 412 TUB Transcription Factor Family AT3G06380 53.2 1.7e-78 289.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002587 1 10 1 0 0 1 3 2 1 2 1 1 3 2 2 3 1 2 3 2 2 0 2 2 2 2 2 2 3 1 59
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18334 PF01167 Tub 3.40E-106 CL0395 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01239 Chy_Chr07 FPKM 21.097097 21.500734 11.073378 11.748946 9.412192 9.182452 9.710506 9.766638 8.022589 9.501037