Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01239 ATGCCGATTCTTCACGGTTTTCCAACGGCGACCACCACGGGATCTGGGGTTTCGATGGTGGTCGGTGGGAGGCTTGATTTTGACAGAAAGCGTGCTTGCTTATGCTGGAGAAAGATGTCGCTTAAAAGCTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCTAAGCGAGGAGAAGAAGGGAGTAGGCATTGGCGAAACCGGACGATGTCACACATTGCACCGGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTTCCCCCTGAATTACTTTTAGACATCATCCGAAGAGTGGAAGAGAGTGAAACCTCGTGGCCTGCACGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGAACCATTACAAAGGAGATTATCAGAACTCCTGAACAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGGTATTGTGGTTTATCCTTCTCCCCCTCTTTTTGGTGAAATCCTTTCATGTTCATGTTCATGTTTTGATTTTCTGTTTACAATTAAAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTCATCAGAAGGGATAGAGCAACTTCAACCTACCTCCTGTACTTTGGTTTGGTTCCTTCGGAGGATGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGGAGAGCAGCTGGTACTGACTTCATCATATCCTTAGCAGCTGATGACTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGACAGCCAGCCTCCTTGTGACCCTGCAGCTCGACAAAATAGCCGGTCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGGGTTCCTGCATGTAACTACAGCGTAGGTACAATATCATATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGAATGCAGTGCATCATGCAAACGATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCATTCACATACTCTCTTGATGACCACCTTTCTTCCATGTCCGATTCTATGAGAAAGGATTCAACAACCAAGGACTTTGGCTCAAAGATCCAATCTGAACCAGCAGTTCGGGCCTCGGATGAATCCTTAGTACTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGAGTGACTGTTGCATCCGTTAAGAACTTTCAACTTGTTGCAGCTGTTGATCAATCTCACAATGTTTCAGTAGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATCGGAAAAGACATCTTCACCATGGATTATCATTACCCCCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGTAGCTTCGACACGAAGCCAGCCTGCGAATGA 1446 45.64 MPILHGFPTATTTGSGVSMVVGGRLDFDRKRACLCWRKMSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRTITKEIIRTPEQCGRLTFPISLKQVLWFILLPLFLVKSFHVHVHVLIFCLQLKPGPRESPFQCFIRRDRATSTYLLYFGLVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSLDDHLSSMSDSMRKDSTTKDFGSKIQSEPAVRASDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17147729 17150364 + Chy7G140690.1 Chy07g01239 231250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01239 481 PANTHER TUBBY-LIKE F-BOX PROTEIN 39 157 - -
Chy07g01239 481 Pfam Tub family 186 476 IPR000007 -
Chy07g01239 481 ProSitePatterns Tub family signature 2. 466 481 IPR018066 -
Chy07g01239 481 SUPERFAMILY Tubby C-terminal domain-like 184 481 IPR025659 -
Chy07g01239 481 Pfam F-box domain 94 140 IPR001810 GO:0005515
Chy07g01239 481 PANTHER TUBBY-RELATED 179 481 - -
Chy07g01239 481 PANTHER TUBBY-LIKE F-BOX PROTEIN 179 481 - -
Chy07g01239 481 PANTHER TUBBY-RELATED 39 157 - -
Chy07g01239 481 MobiDBLite consensus disorder prediction 274 294 - -
Chy07g01239 481 Gene3D Tubby Protein; Chain A 180 481 IPR025659 -
Chy07g01239 481 PRINTS Tubby superfamily signature 238 254 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 409 425 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 391 408 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 303 330 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 254 278 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 459 481 IPR000007 -
Chy07g01239 481 PRINTS Tubby superfamily signature 438 457 IPR000007 -
Chy07g01239 481 Gene3D - 88 141 - -
Chy07g01239 481 SUPERFAMILY F-box domain 88 138 IPR036047 GO:0005515
Chy07g01239 481 ProSitePatterns Tub family signature 1. 409 422 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00642 Chy07g01239 CCT
Chy02g00642 Chy07g01239 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00654 Chy-Chr6:4489235 Chy07g01239 Chy-Chr7:17147729 5.15E-144 dispersed
Chy07g00990 Chy-Chr7:14575065 Chy07g01239 Chy-Chr7:17147729 5.24E-109 dispersed
Chy07g01239 Chy-Chr7:17147729 Chy11g01469 Chy-Chr11:21443334 1.15E-147 dispersed
Chy02g00642 Chy-Chr2:3917442 Chy07g01239 Chy-Chr7:17147729 0 wgd
Chy04g00489 Chy-Chr4:4705059 Chy07g01239 Chy-Chr7:17147729 3.92E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18334 PF01167 Tub 3.40E-106 CL0395 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01239 K19600 - csv:101205595 783.867