Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01240 ATGGGAACTGATACTACTGAAAATGTGGAGGCAGTTTCAAATGCCCATTCCTTCAAGGTTCATTGTAGAATGTGCACTGAGTTAATGAAATTGGTTGACCGGGTCTCGGAGATATTACCAGAAATTGAAGCAGCTCGGCCTGGAAGTCCGGAAGGAAGACAGGCATTATGCAATTTAAACGAAGGAAAGATGAAAGCTGAGCTACTTCTTCAGTATTGTCGAGACTCTAGTAAACTTTATCTGGCATTGACAGGAGATAGGATTGTCTCTAGATGTCACAGAGTGAGGACTTTGTTGGAGCATAATTTGCGTAAAATTAAATACATGGTTTCCGTGGCGTTGGCTCGAAAGATCTCTCAAATAGCAGATGATCTTAGGGTTGCCAAATTTATCCTCGACTCATCTGAAGAAGAGGCTTGGAAGGATATGCGACAATTGCTGAAGCTAGGTGCTTTGCCTCCAGATGAACTGGAAAAATCTGAAATCAAGGCTCTTAAAACTGCTGCTTTGAGGCTTAATATTTTGTCATCCAAGGAATTGCTGTATGAGAGACGATCAATCAGGAAATTATTAGATGATGTTGGTCGTGATGATCCCCCGAAAAAGAAGATTTTGACATACCTCCTATATCTTTTGAAGAAGCACGGGGAGTTGATACTGCAAGAAATCAGAGAAACCCAAGCCTATAGTTCTAGTAGTAATGAATATGGGGAAATTAAAGCTAATGCGAGACACAGAAATTATGCTTCTCAAGCTGATATAATACTCAATCGGGCGATCCCCCCTGAGGAATTTAAGTGCCCCATATCAATGAGATTGATGTATGATCCTGTTGTGATTGCATCTGGAGTGACATATGAGAAGGTGTGGATAGAAAAGTGGTTTCTGGAGGATCATGATACATGCCCGCAAACCAAAATGAAATTAGCTGATTGTTCACTGACTCCTAATGTTGATTTGAAGAATTTAATTAATAAATGGTGCATAAAGTTTGGAGTCACTATTCCCGACCCAAGTGTGGAACCAGAGTGCCCCGAGGTTTGGGAGAATTCCATTGCTAGCTTTGGAAGTTCAATGAACGATATACATTTACCCATCGACTTCAGCAATATATCACTTGGAGGTCTTGATAATAGTTACTATCCAGATTTATTGAGGCTCAATGGTGGAATTGAATTGGCTATCAAGTCTGGGCAGAGTAAAGAGGATGATCAGCAAAGATTTCAATCTAATTCAAATGCTGAGGAAATAGACTTGGAGTTTCCATCTACCATGAGTGAGCTTTCATGGGAATCAAAATGCAAGGTTATGAAAGATATGAAAATTTCCATGAACAAAAATGGAGTTGGTCTGACCTTATCTGAAACTGTCTTGGATCAACTTGCCTTATTTTTGAAGGATGCATGTAATCAGCGGGATTTTGAAGCTCAGAAAAATGGATGTGAGCTATTTCTTTCACTTGTGAGAAGAAGCAGATCCAATAGACTGAGTGTTCCTGAGAAGGTTCTGAAATCGTTGGCTAGTTTACTGAATTCAGAAGTGACTTATGAAGTTCTTGCCATTTTAGAAGCGATATCTGGCCACCGTAAATGCAGCTCTAGTTTTGTCACATCCGGTGCCCTTACTTCATTGGCTAAGTACCTCGACTCAGAGATAGAAGACTTGCAAGAATTTGCCATTAAAACTTTATACAATTTGTCCATGAACAGCGACATCTGCTCTGACATCGTATCATTGGGGTGCATCCCGAAACTAGTTCCTTTGCTAAATTACGGGAATTTCTCAGGCAAGTGTATATTTATACTGAAAAATTTGTGCCACACGGAAGAGGCAAGAATTTCTATTGTGGGAACTAATGGCTGCATTAGCTCCATTGCACAACGTCTGGGGATGGGCAGTCTTGAAGACCAGGAGCATGCAGTTACTATCCTTCTTTCCTTATGCTCTCAACGAGTTGAATATTGTGAGTTAGTAATGGAGGAAGGTGTGATCCCTCCTCTTTGCACTATCTCTATGAAGGGAAGTGAGAAAGGAAAAGCAGGTGCCACCGAATTACTCCGACTTCTACGAGATGTTCAGGATAATGAGCCTCAAGATTTTTGTGTTTCTGAACCGTCATCGTCTTATGAGCCCCCGTGCAATTCTGAGCAAAGAATGCCGAGCAAGAAGTCGGGATTTCTTGGAATCTTCTCAAAGCGCACTCCCCGGAAAAACCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCCGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAA 2532 41.39 MGTDTTENVEAVSNAHSFKVHCRMCTELMKLVDRVSEILPEIEAARPGSPEGRQALCNLNEGKMKAELLLQYCRDSSKLYLALTGDRIVSRCHRVRTLLEHNLRKIKYMVSVALARKISQIADDLRVAKFILDSSEEEAWKDMRQLLKLGALPPDELEKSEIKALKTAALRLNILSSKELLYERRSIRKLLDDVGRDDPPKKKILTYLLYLLKKHGELILQEIRETQAYSSSSNEYGEIKANARHRNYASQADIILNRAIPPEEFKCPISMRLMYDPVVIASGVTYEKVWIEKWFLEDHDTCPQTKMKLADCSLTPNVDLKNLINKWCIKFGVTIPDPSVEPECPEVWENSIASFGSSMNDIHLPIDFSNISLGGLDNSYYPDLLRLNGGIELAIKSGQSKEDDQQRFQSNSNAEEIDLEFPSTMSELSWESKCKVMKDMKISMNKNGVGLTLSETVLDQLALFLKDACNQRDFEAQKNGCELFLSLVRRSRSNRLSVPEKVLKSLASLLNSEVTYEVLAILEAISGHRKCSSSFVTSGALTSLAKYLDSEIEDLQEFAIKTLYNLSMNSDICSDIVSLGCIPKLVPLLNYGNFSGKCIFILKNLCHTEEARISIVGTNGCISSIAQRLGMGSLEDQEHAVTILLSLCSQRVEYCELVMEEGVIPPLCTISMKGSEKGKAGATELLRLLRDVQDNEPQDFCVSEPSSSYEPPCNSEQRMPSKKSGFLGIFSKRTPRKNRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK* 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17152391 17160038 - Chy7G140700.1 Chy07g01240 231251

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01240 843 CDD RING-Ubox_PUB 265 306 IPR045210 -
Chy07g01240 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 331 IPR013083 -
Chy07g01240 843 SUPERFAMILY Sm-like ribonucleoproteins 756 841 IPR010920 -
Chy07g01240 843 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Chy07g01240 843 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 571 IPR000225 GO:0005515
Chy07g01240 843 Pfam LSM domain 764 838 IPR001163 -
Chy07g01240 843 MobiDBLite consensus disorder prediction 700 721 - -
Chy07g01240 843 MobiDBLite consensus disorder prediction 700 753 - -
Chy07g01240 843 Gene3D - 751 843 - -
Chy07g01240 843 Gene3D - 451 594 IPR011989 -
Chy07g01240 843 Gene3D - 595 701 IPR011989 -
Chy07g01240 843 PANTHER U BOX DOMAIN-CONTAINING 24 705 - -
Chy07g01240 843 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 24 705 - -
Chy07g01240 843 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Chy07g01240 843 SUPERFAMILY RING/U-box 261 337 - -
Chy07g01240 843 SMART Sm3 761 840 IPR001163 -
Chy07g01240 843 SUPERFAMILY ARM repeat 465 689 IPR016024 -
Chy07g01240 843 CDD Sm_D2 753 842 IPR027248 GO:0008380|GO:0030532
Chy07g01240 843 Pfam U-box domain 262 328 IPR003613 GO:0004842|GO:0016567
Chy07g01240 843 Pfam Kinesin-associated protein (KAP) 518 629 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01240 - - - csv:101205359 1368.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00513 Chy-Chr3:7110707 Chy07g01240 Chy-Chr7:17152391 3.61E-07 dispersed
Chy07g01240 Chy-Chr7:17152391 Chy10g00794 Chy-Chr10:13997370 2.62E-79 dispersed
Chy07g01240 Chy-Chr7:17152391 Chy03g01664 Chy-Chr3:18421852 3.07E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01240 Chy_Chr07 FPKM 1.106003 1.006748 1.398906 0.71245 1.411077 1.099796 1.432394 4.35593 4.445966 5.336489