Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01247 ATGGCTACAGAGGAAGATCTTGATCTATCATCTTTGAAAATTCAGCTCAGTGAAACAAATGAAACTTGGAAGCAAGAAATGGAAAAGCGCCAATCAGAAGTAGATGTGTTGCAAGCAAAGCTCATGGAGGTGAAGGCTTCTATAGAAGGGTCTGAGGAAGACTCAAGAAAGGAGCTAGAGGTTCTCTGGCGAAGAGTGAAGACAACTTCTACATTGTTAACGTACTTGAAATCAAAAGCAAGAATGTTAGCAGTTCCTCATTTGGCTCATTCTTCGTGTGGTATTAAACATTTAGAAGGGATAGGGTTAGTTGACAAAACTGGAACACCACTGTCTGGTTGGTCTAAAAGTATTGATCTTTCTCCATTTGATGGTACTGAAGAAGAATCCTTGATTGGTATTGGAAAGCCTTGTGGATTACTAGATGAACAAGATGCAGTTTATATCAGTCAAATACTCAAGTCTGTTCAGATGGTTTCAGATGTCATGGAAGCACTTGTCAAGAGGGTTATTTTGGCAGAATCAGAAACTGCTGAAGAGAAGGAAAAGGTTCATTTGGGTCGGGAGGAAATTAAAAAAAAATCAATCCAGATTGAAAACATGTCATCAAAACTAGAGGAAATGGAACAATTTGCTGTGGGTACAAATGGCATTCTAAATGAAATGCGGCAGAGAGTTGAGGATCTGGTTGAAGAAACGTGTAGACAGAGGCAAAGAGCTGCTGAAAATGAGCAGGAACTATGTCGTGTTAAGAGGGACTTTGAGTCTTTGAAATCATATGTCAGTAGTCTCATCACTGTTAGAGAAACACTTTTATCATCGGAAAAACAATTTCAGACAATCGAGAGGCTGTTTGAACGGCTAGTTGCTAAGACCACTCAGTTGGAGGGTGAGAAAATGCAGAAAGAAGTAGAAGTCCAGAAACTTATGGAAGAAAATGTGAGGTTGAGTGCTCTTCTTGACAAGAAAGAGGCTCAACTTTTAGCTATGAATGAACAATGCAAGGGAAAAAGACAAGCAAGTGGCCGTTCCCCAGTTTCAGTTATGGTAAATTGGTTCTCTCTAATGGTTCAAACTCCAAATCTTATCCGCCGCATATCCACTAAAATACGAGATTGCAGAGAAATGGCTGCACCCAAATCACCATTTCAGATAATATTAGGTTCATCGTCAATGGCTCGTCGGCGCATTCTGTCGGAAATGGGATACGAGTTCACTATAATGACGGCGGACATTGATGAGAAAGCGATTAGGAAGGAAAGGCCTGAAGAGTTGGTGGTGGCTCTGGCTGAGGCAAAGGCAGATGCAATTATGTCAAGAATTCTAGCCACTGGCGTTCAACTCAACAATGATGCACATCCGACACTGCTAATCACTGCAGACACTGTGGTGGTCTATGAAGGAACAATTAGAGAAAAACCATCCAACAAGGACGAAGCTCGTAAATTTATCAAAGGCTATTCTGGTAGTCATGCTTCTGTTGTAGGTTCTGTACTCGTAACCAACCTTATGACAGGAACAAGAAAAGGGGGATGGGAAGAGGCAGAGGTTTATTTCTATGACATACCAGAGGAGATTATAGATACCCTGATTGAAGATGACGTTACATTCAAAGTAGCTGGGGGTCTGATGTTGGAGCATCCACTGACTTTGCCATTGGTTGAGGCAGTGGTAGGTTCAACTGACACAGTGATGGGACTTCCCAAAGCTCTTACGGAGAAACTCATGAATGATGCTCTATAG 1743 41.59 MATEEDLDLSSLKIQLSETNETWKQEMEKRQSEVDVLQAKLMEVKASIEGSEEDSRKELEVLWRRVKTTSTLLTYLKSKARMLAVPHLAHSSCGIKHLEGIGLVDKTGTPLSGWSKSIDLSPFDGTEEESLIGIGKPCGLLDEQDAVYISQILKSVQMVSDVMEALVKRVILAESETAEEKEKVHLGREEIKKKSIQIENMSSKLEEMEQFAVGTNGILNEMRQRVEDLVEETCRQRQRAAENEQELCRVKRDFESLKSYVSSLITVRETLLSSEKQFQTIERLFERLVAKTTQLEGEKMQKEVEVQKLMEENVRLSALLDKKEAQLLAMNEQCKGKRQASGRSPVSVMVNWFSLMVQTPNLIRRISTKIRDCREMAAPKSPFQIILGSSSMARRRILSEMGYEFTIMTADIDEKAIRKERPEELVVALAEAKADAIMSRILATGVQLNNDAHPTLLITADTVVVYEGTIREKPSNKDEARKFIKGYSGSHASVVGSVLVTNLMTGTRKGGWEEAEVYFYDIPEEIIDTLIEDDVTFKVAGGLMLEHPLTLPLVEAVVGSTDTVMGLPKALTEKLMNDAL* 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17200754 17207607 - Chy7G140770.1 Chy07g01247 231258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01247 580 Coils Coil 292 340 - -
Chy07g01247 580 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 1 335 IPR040225 GO:0009639|GO:0009959
Chy07g01247 580 CDD Maf 385 575 IPR003697 GO:0047429
Chy07g01247 580 SUPERFAMILY ITPase-like 383 577 IPR029001 -
Chy07g01247 580 Gene3D - 377 578 IPR029001 -
Chy07g01247 580 PANTHER KINECTIN-LIKE PROTEIN 1 335 - -
Chy07g01247 580 Pfam Maf-like protein 384 577 IPR003697 GO:0047429
Chy07g01247 580 Hamap dTTP/UTP pyrophosphatase. 384 580 IPR003697 GO:0047429
Chy07g01247 580 Coils Coil 223 243 - -
Chy07g01247 580 Coils Coil 20 54 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01247 - - - csv:101204866 628.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00507 Chy-Chr4:4942432 Chy07g01247 Chy-Chr7:17200754 2.90E-87 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0810 . . . . . Chy07g01247 . . . Bda11g01867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005822 1 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01247 Chy_Chr07 FPKM 24.738384 26.281029 37.255741 37.297916 13.822972 11.817596 14.35849 64.245598 68.425407 78.647285