Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01258 ATGATCGGTTTCTCCCGCAGCCTCTCCACTGTCTCCAAGCTTAGTCATTTACAGAACCTCCAAACACGGGCGTCGCAAAATTTCATTCCCTTTCCTCAGTTGCAACACCAGCGGAAGCTTTTAGAATGGCGACTCATGAGTATTCTTCACGACTGCACGCTCTTTTCTCAAATCAAGCAAGTCCATGCCCATATCATCCGCATCGGATTGAGTCAATGTTCTTACGTTCTCACCAAACTTATCCGCATGCTCACGAAGGTAGATGTCCCCATGGGTTCCTACCCACTTCTGGTTTTTGGACAGGTTAATTATCCCAACCCCTTTCTTTGGACTGCCATGATTCGTGGATACGCGCTTCAAGGGCTCTTGTTTGAATCTACTAACTTCTATACTAGAATGAGGAGGGATGGCGTTGGTCCTGTTTCGTTTACGTTTTCGGCGCTTTTTAAGGCATGTGGGGCTGCTCTTAATATGGATTTGGGTAAGCAGGTGCATGCCCAGACGATTTTGATTGGAGGATTTGCTTCTGATTTGTATGTAGGTAATTCGATGATTGATTTGTATGTGAAATGTGGGTTCTTGGGTTGTGCGCGGAAGGTGTTCGATGAAATGTCTGAGAGAGATGTGGTTTCTTGGACTGAACTGATTGTTGCGTATGCGAAGTATGGGGATATGGAATCTGCTAGTGGTCTGTTTGATGATTTGCCTTTGAAGGATATGGTGGCATGGACGGCAATGGTCACGGGTTATGCCCAAAATGGCAGACCAAAAGAGGCATTGGAGTATTTTCAGAAAATGCAGGATGTAGGTATGGAGACCGACGAAGTTACACTGGCCGGTGTCATTTCAGCCTGTGCTCAGTTGGGTGCAGTTAAACATGCTAACTGGATTAGAGACATTGCTGAAAGATCAGGTTTTGGACCTTCTGGAAACGTAGTCGTGGGATCTGCTCTTATTGATATGTACTCTAAATGTGGCAGTCCTGATGAGGCATATAAGGTTTTTGAAGTAATGAAGGAAAGAAATGTGTTTTCTTATAGTTCCATGATTTTGGGATATGCAATGCATGGTCGTGCTCATTCAGCTTTGCAGTTATTCCATGATATGTTAAAAACAGAAATCAGGCCAAATAGGGTTACTTTTATTGGGATACTTTCAGCCTGCAGCCATGCCGGTTTGGTTGAACAAGGCCGACAGCTATTCGCTAAGATGGAGAAGTTTTTCGGTGTTGCTCCGTCACCTGATCATTATGCATGTATGGTAGATCTCCTAGGTCGAGCTGGATGTTTGGAAGAAGCACTCGACCTCGTTAAAACCATGCCAATGGAACCTAATGGAGGTGTATGGGGAGCACTGCTTGGGGCTTGCCGCATCCATGGGAATCCTGACATTGCTCAAATAGCTGCGAACGAACTATTCAAGCTCGAACCAAATGGTATAGGGAACTACATTTTGCTATCGAACATATATGCATCAGCAGGGAGGTGGGAGGAAGTATCGAAATTGAGGAAAGTGATTAGAGAAAAAGGCTTTAAGAAGAATCCGGGCTGCAGCTGGTTTGAAGGGAAGAATGGGGAAATTCACGATTTCTTTGCAGGTGATACAACTCATCCACGATCAAGTGAGATTAGACAGGCCTTGAAGCAGCTAATTGAAAGATTAAGAGCCCATGGATACAGACCAAACTTGGGCTCTGCTCCTTATGATATGACTGATGATGAAAAGGAAAGAATACTGATGAGTCATAGTGAAAAGCTTGCATTGGCATATGGGCTGCTATGTACTGAAGCTGGTGATACCATTAAGATTATGAAAAACATTAGGATATGCGAGGATTGTCATAATGTCATGTGTGCTGCATCAGAGATCACTGGAAGGGAAATCATTATAAGGGATAATATGAGATTTCATCACTTCCACAATGGGACTTGTTCATGTGGTAACTTTTGGTGA 1953 43.93 MIGFSRSLSTVSKLSHLQNLQTRASQNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRIGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLFESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNRVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRAHGYRPNLGSAPYDMTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIIRDNMRFHHFHNGTCSCGNFW* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17283472 17285424 - Chy7G140880.1 Chy07g01258 231269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01258 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Chy07g01258 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Chy07g01258 650 Pfam PPR repeat family 238 286 IPR002885 -
Chy07g01258 650 Pfam PPR repeat family 341 389 IPR002885 -
Chy07g01258 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Chy07g01258 650 TIGRFAM PPR: pentatricopeptide repeat domain 182 210 IPR002885 -
Chy07g01258 650 TIGRFAM PPR: pentatricopeptide repeat domain 241 274 IPR002885 -
Chy07g01258 650 TIGRFAM PPR: pentatricopeptide repeat domain 317 343 IPR002885 -
Chy07g01258 650 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Chy07g01258 650 Gene3D Tetratricopeptide repeat domain 317 542 IPR011990 GO:0005515
Chy07g01258 650 Gene3D Tetratricopeptide repeat domain 171 310 IPR011990 GO:0005515
Chy07g01258 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 341 IPR002885 -
Chy07g01258 650 PANTHER BNAC09G18050D PROTEIN 13 633 - -
Chy07g01258 650 Pfam E motif 459 521 IPR046848 -
Chy07g01258 650 Pfam PPR repeat 109 138 IPR002885 -
Chy07g01258 650 Pfam PPR repeat 417 441 IPR002885 -
Chy07g01258 650 Pfam PPR repeat 210 235 IPR002885 -
Chy07g01258 650 Pfam PPR repeat 182 208 IPR002885 -
Chy07g01258 650 Pfam DYW family of nucleic acid deaminases 558 650 IPR032867 GO:0008270
Chy07g01258 650 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Chy07g01258 650 Pfam E+ motif 527 554 IPR046849 -
Chy07g01258 650 SUPERFAMILY TPR-like 219 498 IPR011990 GO:0005515
Chy07g01258 650 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 633 - -
Chy07g01258 650 Gene3D Tetratricopeptide repeat domain 7 170 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01258 - - - csv:101203412 1310.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01258 Chy-Chr7:17283472 Chy08g01077 Chy-Chr8:17920890 3.35E-177 dispersed
Chy01g00252 Chy-Chr1:1743427 Chy07g01258 Chy-Chr7:17283472 5.68E-12 transposed
Chy01g02067 Chy-Chr1:25487345 Chy07g01258 Chy-Chr7:17283472 1.56E-31 transposed
Chy02g00549 Chy-Chr2:3304297 Chy07g01258 Chy-Chr7:17283472 8.51E-93 transposed
Chy02g00875 Chy-Chr2:5635745 Chy07g01258 Chy-Chr7:17283472 1.24E-175 transposed
Chy02g01092 Chy-Chr2:7679679 Chy07g01258 Chy-Chr7:17283472 9.30E-24 transposed
Chy02g01774 Chy-Chr2:19214612 Chy07g01258 Chy-Chr7:17283472 1.04E-135 transposed
Chy05g00175 Chy-Chr5:1378489 Chy07g01258 Chy-Chr7:17283472 4.94E-169 transposed
Chy05g01051 Chy-Chr5:15068041 Chy07g01258 Chy-Chr7:17283472 1.01E-123 transposed
Chy05g01193 Chy-Chr5:16406583 Chy07g01258 Chy-Chr7:17283472 2.28E-123 transposed
Chy06g01458 Chy-Chr6:15802330 Chy07g01258 Chy-Chr7:17283472 2.61E-98 transposed
Chy10g01208 Chy-Chr10:16805801 Chy07g01258 Chy-Chr7:17283472 2.04E-13 transposed
Chy11g01080 Chy-Chr11:15550386 Chy07g01258 Chy-Chr7:17283472 2.14E-06 transposed
Chy12g00108 Chy-Chr12:1153811 Chy07g01258 Chy-Chr7:17283472 7.07E-94 transposed
Chy12g00658 Chy-Chr12:9449689 Chy07g01258 Chy-Chr7:17283472 8.14E-17 transposed
Chy02g00641 Chy-Chr2:3910321 Chy07g01258 Chy-Chr7:17283472 5.30E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1035 . . . . . . . . . Cmo16g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01258 . . . . . . . Bma03g00979 . . . . Cma16g00633 . . . . Cpe14g00540 . . . . . . . Cla07g00830 . . . . . . Lsi07g00239 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012740 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01258 Chy_Chr07 FPKM 0.0 0.0 0.247178 0.0 0.0 0.0 0.0 0.191443 0.0 0.0