Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01267 ATGAGTAGGCCGTTGATATTTACCCTTTTCTTTCTCCTCATCGCCATCATCCTCCCGGCCGCCGCCCAAAACTGGACGGCTGGTGGCGGCCGGGGAATGAGAACAGTGCAAGATGAATACTACAAGTGGATAAGACATATGGGTTCTTTCAAGCACTCTCTTTTCCAAAACACTAAGAACAAGTTCAAGCCTTGTTTGACGTTGAAGGTTTCCAAGAACACCAAGGCTGGTGGTTTCCGCTCGCTTCAGAAGGCGGTGAACTCTTTGCCGATTATCAACCGGTGTCGGGTCCGTATCCATGTTGCTGCTGGAATCTACAGAGAGAAAGTTGAGATTCCAGCGACGATGAGTTACATATGGGTGGAAGGTGAAGGAGCGGAGAAGACAATCATTGAATGGGGCGACACGGCGGACCATATGGGAGAAAATGGCCGTCCTATGGGCACTTTTGCTTCTGCAACTTTTGCTGTTAATTCTCCATTCTTCATTGCTACTAACATCACCTTCAAGAACAAGGCGAGGCTTCCACCATCAGGAGCACTGGGAAAGCAAGCAGTTGCATTTAGAATATCAGGAGATGCAGCAGCATTTATAAGTTGTAGGTTCATCGGTGCACAAGACACATTATACGACCATATGGGACGACACTACTTCAAGGATTGCTACATTGAAGGGTCAGTGGACTTTGTGTTCGGTGATGGCCTCTCCATCTATGATAGTTGTCATTTGCATGCCATCACCAACAGTTACGGTGCTCTCACGGCCCAAAAGAGGAATAGCATGCTCGAAGAAACTGGCTTCTCTTTCCTTCATTGTAAAGTTTCTGGCTCAGGCGCCTTGTATTTGGGTAGGGCATGGGGCAGCTTCTCTAGAGTTGTGTTTGCTTATACATTTATGGATAAAATCATCACTCCCACTGGTTGGTACAATTGGGGCGACAAAAATCGTGAATTGACTGTATTTTATGGACAATATCGATGCTCTGGACCAGGAGCTGATTATGGAGGAAGGAACTTCGTTCTAGCTAGTACCATATACTAA 1041 46.49 MSRPLIFTLFFLLIAIILPAAAQNWTAGGGRGMRTVQDEYYKWIRHMGSFKHSLFQNTKNKFKPCLTLKVSKNTKAGGFRSLQKAVNSLPIINRCRVRIHVAAGIYREKVEIPATMSYIWVEGEGAEKTIIEWGDTADHMGENGRPMGTFASATFAVNSPFFIATNITFKNKARLPPSGALGKQAVAFRISGDAAAFISCRFIGAQDTLYDHMGRHYFKDCYIEGSVDFVFGDGLSIYDSCHLHAITNSYGALTAQKRNSMLEETGFSFLHCKVSGSGALYLGRAWGSFSRVVFAYTFMDKIITPTGWYNWGDKNRELTVFYGQYRCSGPGADYGGRNFVLASTIY* 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17393411 17405314 + Chy7G140970.1 Chy07g01267 231278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01267 346 PANTHER PECTINESTERASE 35 337 - -
Chy07g01267 346 SUPERFAMILY Pectin lyase-like 67 340 IPR011050 -
Chy07g01267 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 337 - -
Chy07g01267 346 Pfam Pectinesterase 75 337 IPR000070 GO:0030599|GO:0042545
Chy07g01267 346 Gene3D - 66 344 IPR012334 -
Chy07g01267 346 ProSitePatterns Pectinesterase signature 2. 223 232 IPR033131 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01267 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101222494 674.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01167 Chy-Chr2:8362276 Chy07g01267 Chy-Chr7:17393411 4.65E-146 dispersed
Chy07g01267 Chy-Chr7:17393411 Chy09g01087 Chy-Chr9:13184232 1.30E-84 dispersed
Chy07g01267 Chy-Chr7:17393411 Chy03g01447 Chy-Chr3:17086181 5.71E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00534 . .
Vvi16g252 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01267 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014252 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01267 Chy_Chr07 FPKM 0.0 0.0 6.614281 0.0 22.398077 0.0 0.0 4.894351 4.450851 0.0