Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01268 ATGGACAAACCCCACGATCCCCCTCTCGATTTCTACAAACCCCGTCTTCAATCTCATGACCCTCACCCACCTCCTCCCCCTCTTTCCGCCAATTCTATTCCTCCTCCTCCTCTTCCTCTTCCTCCTCCTCCTGACCTTATGGACCTCGATCCTTCCTCAACTAACCCACGTGTCCATGATTCCCAGCTCCCTGATTCTAACCTTAATGCTCAATTGAAAGACAAAATTGTTGTTGTTGGGGCTCGTCGACGAGGTCGTCCTCCTCGTGCTCAACTTAATCTACCTCCGCCTCCCTTGAGACAGAAGAAGGATGAGGAGGATGTTTGTTTTATTTGCTTTGATGGTGGAAGCCTTGTTCTCTGTGATCGTCGAGGGTGTCCAAAGGCTTATCATCCATCATGCATTAAGCGAGATGAATCATTCTTTCGATCTAAGGCTAAATGGAATTGTGGATGGCACATATGCACAAGTTGCCAGAAGGCTTCCTATTATATGTGCTATACATGCCCCTTTTCTCTGTGCAAAGGATGTATTAAAGGTGCTGATTATCAGTGTGTTAGGGGAAGCAAAGGGTTCTGTGGAACTTGTATGAAAATAATAATGCTCATTGAGAAAAGGGCACCTGATGGAGAATCGGTTCAAGTTGATTTTGACGACAAAAGTAGCTGGGAGTATCTTTTTAAAGTGTATTGGATTTATTTGAAAGAGAAACTTTCTTTAACTGTGGATGAGCTAGTTCGAGCTAAAAATTCATGGCAAGGAAGCACTATCATGGACCATAAGGTGGGTCCTAATGAGCTTTTCAATGGCAGTATTGATAAAAGCCAAGGAGCTCATAATTCATATAGAAACCCAAAATCACAGAGGAAAAGGCCTAACAGGCAACAAGGGTCTCTGAATAAATTCAGTTCCTTAGTGGACAGGCCAAGTAGTAACGAGCAATTTTCTGGAAGCACAAAATGGGGAACTACAGAGCTCATGGACTTAGTTACACATATGAGAAATGGTGATACAAGCAGGCTTTCACCATTAGATGTACAAGCTTTACTGCTGGAATATGTGAAGAAAAATAATCTTCGTGATCCTCAACAGCAATCCCAAATTATTTGTGATTTCAGGCTTACCAATCTATTTGGGAAATCACGGATAGGTCACTTTGAGATGCTAAATCTTCTTCAGTCTCATGTACACGGAAAAGAAACTGCAGCTGATAATGTAGCCAGCTCAGGAGCTGGTACAGTGATCAATCCAGTTGAAAGCAAAGAGAAGCATGATTCTGAATCAGTGGATGACTGTGAAAGAAAGCATAAAACAAACAAGAAAGCTGATGAGAGTAGGGAGCAATTACATGCTATTGCAGATGAATATGCTGCAATTGACGCTCAGAACATTAATTTGATTTACTTGCGGCGTGATTTGATAATGAGCCTAATTGATGATGAGAAAAAATTTAATGACATGGTTGTAGGCTCTATTGTGAGAATACAGATTCCAAATAATGATGAAAAGCATGATTTTCATAGGCTTGTCCAAGTTGTAGATGCTCCAAAAAGAGATCTCCCGACTCACTCAACTCCATGTTCAAGCAAAGATGTTGCGGAGAGGTTACAACGTCTAAAGTCACCTGGTGAAGAACACCAACATAGGCTTCTTGAAAATCTCGAAGTACGATCTGATCCAACTATGGATCCAAGTTATGAGTCTGAAGAAGATAAGGATGAATCAAACAAGAAAAGACAAGGAAGTCTCAAGAGATCTAGAAATTGTGATTTTGATGAAAAAGAGGTGGAGCTTACCTCACCACGAAGAGGAACCAATTCAAATGTTTGTGGAATTGAATTACAGAAAAATTTGACTAGCACTTCAGAGCAAAGTAGAAATATTAGCTTAACTGCTCACGTAAATAAAGAAGGGGAATGCTTGCCCAGTGACAGGATTTGCGAAACATCGTTGACTGGAAGAGGTCTTGTACCAAATAACTGGAATGTACCTAGCCAGGCTAAAACTTCCACTCCTGTGTCCTCTGATGGGAATTATCAAGTGGTCTTACCTGAAGCCTCAATTCCGCCACTTTCTATTGGGTTAGGAAGTTCTTCCAATGACGCAGAAGTGGAAAGGATATGGCAATACCAGGATCCTACTGGAAAAGTTCAAGGTCCATTTTCTATGACGCAGTTACGCAATAGTGGACACTTCACTCCTGATCTTAGAGTATGGAGGATAACAGAATCACAAAACGACTCTGTACTGTTAACCAATGCGTTAAATGGATGTTACAACAAAGCATCTTCCATTTGGCAGCCCAACAATCATCTTCTGAGTCTAGGGCGAGGGAGTGGACTTTCTTTAGGTGGTTCAGATAATCATCATAATGATGGAGGTACTGATTCTAGTACAAATTTTGTTCGGTTTGGTATTGATTCTACCAAGAATAGAAACTCTGAGCAGAAAGATCATATTGCAGTTTGTGATGCTGAAAATGAGCCCATGATGAGCACCGGTTCAAGTTCACCTTCTAAAGATTTTTGTGCTCCTGCAGATACTGTCAACTCTATTCAGTCTCCTAGGAATCTTGAGGTAGCACACGAACCGTTGAAGAACAGTAGTTCGTGGTCCTACCCATCCCTTATGAATTTACTTTCCTCTGCTACATTATCTTTACAACCGCCAGTGACTGAAGTCCATGAAGCCAAGGAAAACCACAGCCCCAATAACGAGGATCAGAATTCACAGACCATTAGTTTGGGAGGAATTCATAGTCAACCCGGTCGCAAGAAACGGTCTAGTAGTGAAGATTGTTCTAGTCAATCTTCTGGACAAAACTGGATTGCTCCACCTGCAGCAGATGCTTCCTCTCGGGAATGGAACTCTAATTGTAGTGGTCTTTCTTTGATGGGTTCATTCAATCCTTCAGAGAAAATCCGAGAAATTTTACCCGATATTACTCTTCATTCTGCCCCGAAACCAATGACTGGAGATGTTGACATTAAACAATCTGCATCTTCAAGTGTTCTTGTTCAGAATTCTGGCCCTAGCTGGAGTAGTGCGGGTGGATGGGGGGATGGTTATATGGCTGCACCAGGTAGACCTATTGAGGACTTGAACTCGAGTTTTGGTCTGAAATCATCTGATATAATTGATGATCACGAAACAACTGGGGCTACAATAAATTGGGGGGCAATTGATGATGATTCCAACGACTTCAATTCCTTGGTTGATGAATCTGTCTCAGATTTGTTAGCAGAAGTCGAAGCAATGGAATGCTTGAGTGGTTTGGCTTCCTCAGCATCAATGATGAATTGTAGCGAGGGACTAACTCGGGACTCTAGAACTGATTGTTTCTTCTCAGTGGACGGTTTCAATCCAGCAGCTGAGATGGGGAAGGTGGATGCATTAAGCTCCACAGCCAATATGCAGTTTCCATATCATATCAGAGTGAAAGATGAGCAACCTTGA 3456 41.98 MDKPHDPPLDFYKPRLQSHDPHPPPPPLSANSIPPPPLPLPPPPDLMDLDPSSTNPRVHDSQLPDSNLNAQLKDKIVVVGARRRGRPPRAQLNLPPPPLRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDESFFRSKAKWNCGWHICTSCQKASYYMCYTCPFSLCKGCIKGADYQCVRGSKGFCGTCMKIIMLIEKRAPDGESVQVDFDDKSSWEYLFKVYWIYLKEKLSLTVDELVRAKNSWQGSTIMDHKVGPNELFNGSIDKSQGAHNSYRNPKSQRKRPNRQQGSLNKFSSLVDRPSSNEQFSGSTKWGTTELMDLVTHMRNGDTSRLSPLDVQALLLEYVKKNNLRDPQQQSQIICDFRLTNLFGKSRIGHFEMLNLLQSHVHGKETAADNVASSGAGTVINPVESKEKHDSESVDDCERKHKTNKKADESREQLHAIADEYAAIDAQNINLIYLRRDLIMSLIDDEKKFNDMVVGSIVRIQIPNNDEKHDFHRLVQVVDAPKRDLPTHSTPCSSKDVAERLQRLKSPGEEHQHRLLENLEVRSDPTMDPSYESEEDKDESNKKRQGSLKRSRNCDFDEKEVELTSPRRGTNSNVCGIELQKNLTSTSEQSRNISLTAHVNKEGECLPSDRICETSLTGRGLVPNNWNVPSQAKTSTPVSSDGNYQVVLPEASIPPLSIGLGSSSNDAEVERIWQYQDPTGKVQGPFSMTQLRNSGHFTPDLRVWRITESQNDSVLLTNALNGCYNKASSIWQPNNHLLSLGRGSGLSLGGSDNHHNDGGTDSSTNFVRFGIDSTKNRNSEQKDHIAVCDAENEPMMSTGSSSPSKDFCAPADTVNSIQSPRNLEVAHEPLKNSSSWSYPSLMNLLSSATLSLQPPVTEVHEAKENHSPNNEDQNSQTISLGGIHSQPGRKKRSSSEDCSSQSSGQNWIAPPAADASSREWNSNCSGLSLMGSFNPSEKIREILPDITLHSAPKPMTGDVDIKQSASSSVLVQNSGPSWSSAGGWGDGYMAAPGRPIEDLNSSFGLKSSDIIDDHETTGATINWGAIDDDSNDFNSLVDESVSDLLAEVEAMECLSGLASSASMMNCSEGLTRDSRTDCFFSVDGFNPAAEMGKVDALSSTANMQFPYHIRVKDEQP* 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17408028 17415404 + Chy7G140980.1 Chy07g01268 231279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01268 1151 MobiDBLite consensus disorder prediction 291 318 - -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 932 950 - -
Chy07g01268 1151 CDD SWIB-MDM2_like 338 396 - -
Chy07g01268 1151 SUPERFAMILY SWIB/MDM2 domain 321 399 IPR036885 -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 410 444 - -
Chy07g01268 1151 ProSiteProfiles SWIB/MDM2 domain profile. 315 398 IPR003121 -
Chy07g01268 1151 Pfam SWIB/MDM2 domain 338 396 IPR003121 -
Chy07g01268 1151 PANTHER UNCHARACTERIZED 534 1147 - -
Chy07g01268 1151 PANTHER UNCHARACTERIZED 71 521 - -
Chy07g01268 1151 SMART rtf1 458 556 IPR004343 GO:0003677
Chy07g01268 1151 MobiDBLite consensus disorder prediction 825 848 - -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 269 318 - -
Chy07g01268 1151 CDD PHD5_NSD 108 153 - -
Chy07g01268 1151 Gene3D - 459 562 IPR036128 GO:0003677
Chy07g01268 1151 SUPERFAMILY Plus3-like 459 521 IPR036128 GO:0003677
Chy07g01268 1151 MobiDBLite consensus disorder prediction 1 17 - -
Chy07g01268 1151 PANTHER BNAC08G48800D PROTEIN 534 1147 - -
Chy07g01268 1151 PANTHER BNAC08G48800D PROTEIN 71 521 - -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 269 283 - -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 829 848 - -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 54 69 - -
Chy07g01268 1151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 196 IPR013083 -
Chy07g01268 1151 SUPERFAMILY GYF domain 703 757 IPR035445 -
Chy07g01268 1151 SMART gyf_5 706 758 IPR003169 GO:0005515
Chy07g01268 1151 MobiDBLite consensus disorder prediction 418 444 - -
Chy07g01268 1151 SMART PHD_3 108 154 IPR001965 -
Chy07g01268 1151 Pfam Plus-3 domain 463 517 IPR004343 GO:0003677
Chy07g01268 1151 Gene3D - 707 762 IPR035445 -
Chy07g01268 1151 SUPERFAMILY FYVE/PHD zinc finger 104 160 IPR011011 -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 904 918 - -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 1 70 - -
Chy07g01268 1151 ProSitePatterns Zinc finger PHD-type signature. 109 169 IPR019786 -
Chy07g01268 1151 Pfam GYF domain 708 745 IPR003169 GO:0005515
Chy07g01268 1151 ProSiteProfiles GYF domain profile. 705 756 IPR003169 GO:0005515
Chy07g01268 1151 MobiDBLite consensus disorder prediction 18 49 - -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 893 950 - -
Chy07g01268 1151 MobiDBLite consensus disorder prediction 540 588 - -
Chy07g01268 1151 SMART swib_2 335 401 IPR019835 -
Chy07g01268 1151 Gene3D SWIB/MDM2 domain 309 406 IPR036885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01268 - - - csv:101215854 1181.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00747 Chy-Chr1:5514003 Chy07g01268 Chy-Chr7:17408028 3.60E-160 dispersed
Chy06g01645 Chy-Chr6:19093271 Chy07g01268 Chy-Chr7:17408028 4.73E-63 dispersed
Chy07g01268 Chy-Chr7:17408028 Chy11g01363 Chy-Chr11:19954549 1.23E-06 dispersed
Chy11g00118 Chy-Chr11:1253805 Chy07g01268 Chy-Chr7:17408028 7.87E-06 dispersed
Chy07g01268 Chy-Chr7:17408028 Chy04g02003 Chy-Chr4:25813002 7.65E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1077 Blo04g00896 Blo16g00072 . . Bpe15g00463 Bpe13g00425 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1664 . . . Chy07g01268 . . . Bda11g01845 . . . Bma03g00971 Bma06g00105 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00533 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005786 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18339 PF03126 Plus-3 7.90E-08 No_clan Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01268 Chy_Chr07 FPKM 11.453643 12.907548 46.897064 48.884808 0.46238 0.739747 0.370685 0.433623 0.466789 0.422244
Chy07g01268 Chy_Chr00 FPKM 40.825718 44.593136 27.874893 24.220623 1.42417 2.257311 1.977933 0.0 0.073756 0.0