Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01272 ATGAAATCGTCTAAGGAAATTGCAACCTCGGAGGAGCAACTGGTGGAGGATGATGGTTCTGTTTCGCCTCCGGAGCCCTGTTTCAAAACCCCCATTCCGGCTAAGGTTAGAAGCAAACGGAGGAGAACCAGCGGTCGAGTTTGGTGCCTTCGTTCACCGTCGTTGACCGATTCTTCCTCTTGTTCCACAACGTCGTCCTCCTCGTCATCGCCGGCAAGTCCTTGGCTCATCATTTCCGACCGTTTCGAACCGGAAATTCCAGCCACAAAGAAAAGGAGGAGAAAATCTCCCTCGGAGAAGTCCAGAATCACCATTGGAGCACAGCCGCCTCGGCGGTGCAGTCATTGCGGAGTCCAGAAAACTCCTCAATGGAGAACCGGCCCCCTCGGAGCAAAAACCCTCTGCAACGCTTGCGGTGTTAGGTTTAAATCGGGTCGACTTTTACCCGAATATCGACCCGCATGCAGTCCGACTTTCTCCAGCGAATTGCACTCAAACCATCACCGGAAAGTACTTGAAATGCGCCGGAAAAAGGAAGTCACGGCCCCAGTCGAAAGAAAACAAACTCCCAATATTCCCATTAATGAAGCAAAAAGAAGACATAGCTAA 609 51.23 MKSSKEIATSEEQLVEDDGSVSPPEPCFKTPIPAKVRSKRRRTSGRVWCLRSPSLTDSSSCSTTSSSSSSPASPWLIISDRFEPEIPATKKRRRKSPSEKSRITIGAQPPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVTAPVERKQTPNIPINEAKRRHS* 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17445238 17451990 + Chy7G141020.1 Chy07g01272 231283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01272 202 ProSitePatterns GATA-type zinc finger domain. 113 138 IPR000679 GO:0006355|GO:0043565
Chy07g01272 202 ProSiteProfiles GATA-type zinc finger domain profile. 107 143 IPR000679 GO:0006355|GO:0043565
Chy07g01272 202 PANTHER GATA TRANSCRIPTION FACTOR 18 181 - -
Chy07g01272 202 PANTHER GATA TRANSCRIPTION FACTOR 18 181 - -
Chy07g01272 202 CDD ZnF_GATA 112 160 IPR000679 GO:0006355|GO:0043565
Chy07g01272 202 Gene3D - 106 191 IPR013088 GO:0006355|GO:0008270
Chy07g01272 202 MobiDBLite consensus disorder prediction 49 75 - -
Chy07g01272 202 MobiDBLite consensus disorder prediction 178 202 - -
Chy07g01272 202 MobiDBLite consensus disorder prediction 1 119 - -
Chy07g01272 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 106 169 - -
Chy07g01272 202 Pfam GATA zinc finger 113 147 IPR000679 GO:0006355|GO:0043565
Chy07g01272 202 SMART GATA_3 107 161 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00597 Chy07g01272 CCT
Chy02g00597 Chy07g01272 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00266 Chy-Chr5:2420760 Chy07g01272 Chy-Chr7:17445238 3.20E-37 dispersed
Chy07g01272 Chy-Chr7:17445238 Chy04g00936 Chy-Chr4:13453297 1.73E-33 dispersed
Chy07g01272 Chy-Chr7:17445238 Chy02g00597 Chy-Chr2:3627641 3.49E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18340 PF00320 GATA 2.10E-16 CL0167 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01272 - - csv:101221784 337.806