Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01276 ATGCTACCCCAACAAGGTCATTTGGGCGAGTCTAAACCGAGACGGCGTCGTAAGAAGAGCAGAGGATCGGAAACAGAGGCGGCGTCGGGTGGGAAAAAGAGGAAGCTGACGGCGGCGCAAGTTCATCTTTTGGAGTCGAATTTTGGTAGTGAACATAAATTGGAATCGGAAAGAAAGGACCGGTTAGCGTCGGAGTTGGGGTTGGATCCCCGGCAGGTGGCTGTGTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAACTTGAGGAGGAGTATTCTAATTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACAGAGCTATTGAAGCTAAAAGAGCAACTATTAGAAGTAGAGAAAGAGAAAGAGAGGGTAAGAATGGGAGAAGGGGGTGATGGGCCATTAAGTAGTAGTAGCCCAAGCCCATCAATGTCAATGGAAGCTATGGAGATGGAGCAACCCATATCCCTTGGGGAAATTTCACCATTATATGAAGAAGATGTGTTTTATTACATGCCTGAAAATTATTGTATTTATGGCATGGAATGGCCTAATCCCTACCTTTGA 585 46.15 MLPQQGHLGESKPRRRRKKSRGSETEAASGGKKRKLTAAQVHLLESNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKLHESVVVEKCRLETELLKLKEQLLEVEKEKERVRMGEGGDGPLSSSSPSPSMSMEAMEMEQPISLGEISPLYEEDVFYYMPENYCIYGMEWPNPYL* 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17481412 17483594 + Chy7G141060.1 Chy07g01276 231287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01276 194 MobiDBLite consensus disorder prediction 48 64 - -
Chy07g01276 194 SMART HOX_1 30 91 IPR001356 GO:0003677
Chy07g01276 194 SUPERFAMILY Homeodomain-like 31 95 IPR009057 -
Chy07g01276 194 ProSiteProfiles 'Homeobox' domain profile. 27 87 IPR001356 GO:0003677
Chy07g01276 194 PRINTS Lambda-repressor HTH signature 67 83 IPR000047 GO:0003677
Chy07g01276 194 PRINTS Lambda-repressor HTH signature 58 67 IPR000047 GO:0003677
Chy07g01276 194 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 193 IPR045224 GO:0003700
Chy07g01276 194 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 3 193 - -
Chy07g01276 194 Coils Coil 79 106 - -
Chy07g01276 194 CDD homeodomain 32 88 IPR001356 GO:0003677
Chy07g01276 194 Coils Coil 110 134 - -
Chy07g01276 194 Pfam Homeodomain 32 86 IPR001356 GO:0003677
Chy07g01276 194 ProSitePatterns 'Homeobox' domain signature. 62 85 IPR017970 GO:0000981|GO:0006355
Chy07g01276 194 MobiDBLite consensus disorder prediction 1 64 - -
Chy07g01276 194 Gene3D - 31 100 - -
Chy07g01276 194 MobiDBLite consensus disorder prediction 128 151 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00668 Chy07g01276 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00668 Chy-Chr2:4050615 Chy07g01276 Chy-Chr7:17481412 7.85E-43 dispersed
Chy07g01276 Chy-Chr7:17481412 Chy09g00328 Chy-Chr9:2838024 7.04E-26 dispersed
Chy07g01276 Chy-Chr7:17481412 Chy12g01323 Chy-Chr12:17588638 4.01E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18341 PF00046 Homeodomain 3.90E-17 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01276 K09338 - csv:101221080 317.39