Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01279 ATGCTAACAAGATCTGTTTTAAGGCTTAATACTACTACATACTCTGATGTTCAGAAAGCAATAGCCGCTGGACATCAAAGTGGGCTGTGCTATATAAACAGTTTGCTCCTTGGACGAGGGGAATTGTCATCGAAGGATTGCCGGGTGTCTCATTCCTTGCCATATTCCACATTTTCAATATCGAAAACTTTGAATTTTTCACCAACATTCCCGTTCAATAGAAAAACTATGGCGGCTTCTAGTGCTAAATCTGTTTCTAGAGATGTCTATCTTGAAAATTTCGTCACAAACCGTGGAAACGGTTTTGCAACACCTGTGCGAGTGTTCAATCAGAGAAGTTATGGGAATTTCCAGAAAGCTCGTATGAGTTTGAGAAGGAAACAAGCATCCAATAATTGTCTAATCTCTAACGGTTCAATTGATCTAATGCGTGTGAAGGGAAACTGCTTTCTACAAGTTGGGGTGACCAATCTTCATGCCTTACCTCATGCATGCTATGCTGCAGGGACTGCTAATTCTCCGGCATTTGACAGCAATTCTCGTGATGACCAGTTCCCAAACTCGACCACTTTGTCAAGCAAAGGTTTATTAGGTAAAAGAACTTTGAAGCTGCTTTCAGGATCATGCTATCTTCCCCATCCTGATAAAGAAGAGACGGGAGGAGAGGATGCTCATTTTATTTGTGTGGAGGAACATGTAGTTGGCGTTGCGGATGGTGTAGGTGGTTGGGCAGATGTTGGGATTGATGCTGGGAAGTTTGCTCGCGAACTTATGTCAAACTCAATAAATGCCATACAGGAGCAGCCTGGGGAATCAGTTGACCCTGCCAAGGTGTTAGAGAAAGCTCACTCCGGCACTACGGCTAAAGGTTCTTCAACAGCCTGCATCATTTCTCTTTCTGAAAAGGGACTTCATGCTATCAATCTGGGGGATAGTGGATTCATAGTTATAAGAGATGGAAGCACTATTTTCAGATCCCCCGTTCAGCAACATGGCTTCAATTTTACTTATCAGTTGGAGAGCGGCAATGGTGGTGATTTACCCAGCTCTGGAGAGATTTTTATGATACCTGTCGCTCTGGGAGATGTCATAGTTGCCGGAACGGATGGCTTATTTGACAATCTATACAGTAATGAGATTTCAGCAGTTGTAGTTAATGCAGTTAGATCTGGGTTGGAACCCGAAGCAACTGCTCAAAACATAGCTGCTTTAGCACGCCAAAGAGCACTTGATAGGAACCGACAAACCCCATTTTCTGCTGCTGCCCAAGAGGCTGGTTATCGCTACTACGGTGGTAAGCTGGATGATATCACTGTTGTTGTCTCATACATAACAAATTCCACAAGTACATGA 1353 43.46 MLTRSVLRLNTTTYSDVQKAIAAGHQSGLCYINSLLLGRGELSSKDCRVSHSLPYSTFSISKTLNFSPTFPFNRKTMAASSAKSVSRDVYLENFVTNRGNGFATPVRVFNQRSYGNFQKARMSLRRKQASNNCLISNGSIDLMRVKGNCFLQVGVTNLHALPHACYAAGTANSPAFDSNSRDDQFPNSTTLSSKGLLGKRTLKLLSGSCYLPHPDKEETGGEDAHFICVEEHVVGVADGVGGWADVGIDAGKFARELMSNSINAIQEQPGESVDPAKVLEKAHSGTTAKGSSTACIISLSEKGLHAINLGDSGFIVIRDGSTIFRSPVQQHGFNFTYQLESGNGGDLPSSGEIFMIPVALGDVIVAGTDGLFDNLYSNEISAVVVNAVRSGLEPEATAQNIAALARQRALDRNRQTPFSAAAQEAGYRYYGGKLDDITVVVSYITNSTST* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17515373 17518700 - Chy7G141090.1 Chy07g01279 231290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01279 450 SMART PP2C_4 195 442 IPR001932 -
Chy07g01279 450 Pfam Stage II sporulation protein E (SpoIIE) 233 442 IPR001932 -
Chy07g01279 450 SUPERFAMILY PP2C-like 209 442 IPR036457 -
Chy07g01279 450 SMART PP2C_SIG_2 204 444 IPR001932 -
Chy07g01279 450 Gene3D - 336 449 IPR036457 -
Chy07g01279 450 Gene3D - 215 334 IPR036457 -
Chy07g01279 450 ProSiteProfiles PPM-type phosphatase domain profile. 205 444 IPR001932 -
Chy07g01279 450 PANTHER PROTEIN PHOSPHATASE 57 449 - -
Chy07g01279 450 PANTHER PROTEIN PHOSPHATASE 2C 57 449 IPR039123 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01279 K17508 PTC7, PPTC7; protein phosphatase PTC7 [EC:3.1.3.16] - csv:101215706 836.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00819 Chy-Chr6:5753157 Chy07g01279 Chy-Chr7:17515373 1.25E-44 dispersed
Chy06g00820 Chy-Chr6:5757131 Chy07g01279 Chy-Chr7:17515373 2.95E-53 dispersed
Chy07g00010 Chy-Chr7:115886 Chy07g01279 Chy-Chr7:17515373 2.89E-53 dispersed
Chy07g00519 Chy-Chr7:4202723 Chy07g01279 Chy-Chr7:17515373 7.69E-51 dispersed
Chy07g00520 Chy-Chr7:4204088 Chy07g01279 Chy-Chr7:17515373 1.85E-20 dispersed
Chy07g01279 Chy-Chr7:17515373 Chy12g00329 Chy-Chr12:3538817 8.66E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g935 Blo04g00925 . . . Bpe15g00436 . . . Cmo04g00831 Cmo16g00707 . . . . . . . . . . . . . . . . . . . . . Cone8ag0798 Cone12ag0755 Cone6ag1609 Cone9ag1536 . . Chy07g01279 . . . . . . . . . . . . Cma16g00650 . . . . Cpe14g00554 . . . . . . . Cla07g00856 Cam07g0928 Cec07g0993 . Clacu07g0902 Cmu07g0902 Cre07g1270 Lsi07g00217 Csa04g00521 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001014 3 2 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 6 3 2 2 2 2 2 2 2 2 9 5 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01279 Chy_Chr07 FPKM 68.037781 62.284378 61.720516 61.852581 46.151695 50.092056 43.337925 51.622402 51.718819 53.138756