Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01284 ATGTCCTTCTCCATCTCCACCCGCCACCACATACGTCGACTATGTACGGCAGCCACCGCCGCCACCAATGCCAAGGCGACGACGTCCTCTTCATTATCCATTTCAAGAGCCAAGTCTAAACTTAGAACTGAGTATGATCCAGATAAAGCCGTAGAAATCTACTCTTCTGTTTCTAGTCACTACACCTCTCCTGTCACTTCTCGTTACGCTCAAGAAATAACCATCCGCCGCCTCGCTAAGGCCCGTCGATTCAAGGACATCGAATCCCTAATCGAGTCCCATAAAAACGACCCGAAGATCACTCAGGAACCTTTTTTGTCCACCCTGATTCGATCCTACGGTCGAGTTGGTATGTTCGAGCACGCTATGAGGACTTATAATCAGATGGGTGATTTAGGAACTCCTCGATCCGCACTTTCATTTAATGCCCTGTTAACTGCTTGTAACCATTCGAAGCAATTCGACAAGGTTCCCCAACTGTTCGACGAAATGCCCAAGAGATATAATTTCTCTCCCAATAAGTTCTCGTACGGTATCCTGGTTAAATCCTATTGCGACGCGGGTTCTCCTGAGAAAGCCATGGAGATTGTAAGAGAAATGGAGGAAAATGGCGTGGAGGTAAATGCTGTGACATTCACAACCATATTAAATGCTCTGTACAAAAAGGGTGACAGCGCAGAGGCAGAGAAAATATGGGAGAAGATGATATCAAAAGGGTGTGAACTTGATGTTGGAGCCTATAATGTTAGATTGATGCACGAACATGGTGGCAAGCCAGAGCATGTACAAGCTTTAATCGAGGAAATGGCTAATTCAGGTTTGAAACCCGATGCAATTAGTTATAATTACTTAATGACTTGTTATTGTAAGAATGGGATGTTTGATGAAGCAAAGAAGGTGTATAACGATATGGAGATAAATGGGTGTAATAAGAATGCTGCAACTTTTAGGACACTTATTTATCACCTTTGTAGAAATGGGGAGTATGAGAAAGGGTACAAGGTTTTTAAAGAGAGTGTGAAGATGAATAAGATTCCTGATTTTAACACACTGAAGTATTTGGTGGAGGGGCTAGTGGAGAAGAAGATGATGAGAGAAGCCAAAGGTTTAATCAGGACTATAAGGAAGAAATTCCCTCCTGATACTTTGAAGGCTTGGAGAGAAGTTGAGGAGGGGGTTGGTTTGGCTTATGCTGCTGATGATGTTTCTTCTAAGGATGATGATGAAACTAGAACATGA 1239 43.02 MSFSISTRHHIRRLCTAATAATNAKATTSSSLSISRAKSKLRTEYDPDKAVEIYSSVSSHYTSPVTSRYAQEITIRRLAKARRFKDIESLIESHKNDPKITQEPFLSTLIRSYGRVGMFEHAMRTYNQMGDLGTPRSALSFNALLTACNHSKQFDKVPQLFDEMPKRYNFSPNKFSYGILVKSYCDAGSPEKAMEIVREMEENGVEVNAVTFTTILNALYKKGDSAEAEKIWEKMISKGCELDVGAYNVRLMHEHGGKPEHVQALIEEMANSGLKPDAISYNYLMTCYCKNGMFDEAKKVYNDMEINGCNKNAATFRTLIYHLCRNGEYEKGYKVFKESVKMNKIPDFNTLKYLVEGLVEKKMMREAKGLIRTIRKKFPPDTLKAWREVEEGVGLAYAADDVSSKDDDETRT* 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17541505 17542743 + Chy7G141140.1 Chy07g01284 231295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01284 412 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Chy07g01284 412 PANTHER BNAA09G52830D PROTEIN 8 400 - -
Chy07g01284 412 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Chy07g01284 412 TIGRFAM PPR: pentatricopeptide repeat domain 210 244 IPR002885 -
Chy07g01284 412 TIGRFAM PPR: pentatricopeptide repeat domain 279 311 IPR002885 -
Chy07g01284 412 TIGRFAM PPR: pentatricopeptide repeat domain 107 133 IPR002885 -
Chy07g01284 412 TIGRFAM PPR: pentatricopeptide repeat domain 175 209 IPR002885 -
Chy07g01284 412 TIGRFAM PPR: pentatricopeptide repeat domain 140 173 IPR002885 -
Chy07g01284 412 Gene3D Tetratricopeptide repeat domain 255 406 IPR011990 GO:0005515
Chy07g01284 412 Pfam PPR repeat family 276 325 IPR002885 -
Chy07g01284 412 Gene3D Tetratricopeptide repeat domain 101 254 IPR011990 GO:0005515
Chy07g01284 412 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 8 400 - -
Chy07g01284 412 SUPERFAMILY HCP-like 184 375 - -
Chy07g01284 412 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Chy07g01284 412 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Chy07g01284 412 Pfam Pentacotripeptide-repeat region of PRORP 120 235 IPR033443 -
Chy07g01284 412 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01284 - - - csv:105435344 783.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01284 Chy-Chr7:17541505 Chy07g01619 Chy-Chr7:20267927 2.57E-66 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01284 Chy_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.439854 0.0 0.881692 1.083622