Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01294 ATGGCTTCTTCTTCTTCTTCTCCTAATTTCTCTTTTGGGATTTCTTCCTCTTCCTTCTCTGACCCTTTTCATGTCGCCGCACCCCCTGATTCCTCCGACCCTTCTTTTCATTTCCCTAATTTGGACCACCCTTCTGCTGGATTTCGATTCTTCCCTAATTTTAGTGGTGCCGGTGGAGAGTTTGAATCTGATGAGTGGATGGATAGTTTAGTCGGCGGTGGAGATTCCACGGATAGCTCCACTTTGCCGTCTGGTTGTGAAGGTTATGGTGAGTTTGGTCTTTATGCTGCAGATCCATTTAATGGCTCTCCGCCGTCAGCTGTTGTTCTGGAAAGTGCGTACAAGATTAATAGTGTTCCGCCTCCATGGCCGTCGTGTTCTCCATTGGTGAAGGAGGAGAGAGTAACGAATCCACCGGCGGAGAGGCCGTTGAAGAATGATGTTGTTGAAGGCTCATCGAGTGCATTAGAAGTCGAGTCATCGTCGCCGGTTCTGAAAGTGTTGCTTGATTGTGCGCGGCTTTGTGATTCTGAGCCTAACCGTGCAGCGAAAACTCTTAATCGGATTAGTAAATCGTTACGAGAAGATGGAGATCCGATTGAGCGAGTGGGGTTTTACTTTGGTGATGCTCTTCGGAAGAGATTGTCCTCGACGGCAATGAAGAATTGCTTGGATTCAACTGAGAGCGATGCTAATTCTGAAGATTTCTTGCTCTCTTACAAAGCTCTGAACGATGCCTGTCCTTACTCCAAGTTCGCGCATCTAACGGCCAACCAAGCAATTCTGGAAGTTACAGAGAGAGCAAGTAAAATTCACATTGTCGATTTCGGAATTGTTCAAGGCGTTCAATGGGCAGCGCTTCTGCAGGCTTTGGCAACGCGCGCCACCGGAAAACCTGTCAGGGTTCGTATCTCCGGAATACCAGCGCCGTCGCTCGGAGACTCACCGGCAGCGTCTCTATACGCCACTGGTAATAGACTCTCCGAGTTCGCAAAGCTTCTGGAATTGAATTTCGAGTTCCAACCGATTCTAACGCCGATTGAAAACCTGAAGGAATCGAGCTTCAGCGTTCAATCAGACGAGGTATTGGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTGGATGAGAATCCAACTGGAGTTCATAATGCTCTCCGATTAGCAAAATCGTTGAGTCCTCATATAGTGACTCTCGGTGAGTATGAAGCGAGTTTGAACCGGAACGGATTCTACAATCGTTTCAAGAACGCTCTCAAATTCTACTCCGCCATTTTCGAATCGCTAGAGCCGAACTTGCATCGAGACTCACCAGAAAGACTTCAGTTAGAAAAACTGTTACTCGGCCGTCGAATCGCCGGCGTGGTTGGAACCGTAGAAAATTCAAGACGCGAAAGAAGAGTGCGCATGGAAGATAAAGAACAATGGAAGAATTTGATGGAAAACACCGGATTCGAACCTGTAGCACTCAGCCATTACGCCATTAGTCAGGCGAAAATACTTCTATGGAATTACAATTACAGTTCTCTCTATACTCTGATCGAATCGGCGCCGGAATTTCTTTCTCTGGCATGGAACGACGTTCCTCTCTTAACTGTATCTTCCTGGCGTTGA 1614 47.15 MASSSSSPNFSFGISSSSFSDPFHVAAPPDSSDPSFHFPNLDHPSAGFRFFPNFSGAGGEFESDEWMDSLVGGGDSTDSSTLPSGCEGYGEFGLYAADPFNGSPPSAVVLESAYKINSVPPPWPSCSPLVKEERVTNPPAERPLKNDVVEGSSSALEVESSSPVLKVLLDCARLCDSEPNRAAKTLNRISKSLREDGDPIERVGFYFGDALRKRLSSTAMKNCLDSTESDANSEDFLLSYKALNDACPYSKFAHLTANQAILEVTERASKIHIVDFGIVQGVQWAALLQALATRATGKPVRVRISGIPAPSLGDSPAASLYATGNRLSEFAKLLELNFEFQPILTPIENLKESSFSVQSDEVLAVNFMLQLYNLLDENPTGVHNALRLAKSLSPHIVTLGEYEASLNRNGFYNRFKNALKFYSAIFESLEPNLHRDSPERLQLEKLLLGRRIAGVVGTVENSRRERRVRMEDKEQWKNLMENTGFEPVALSHYAISQAKILLWNYNYSSLYTLIESAPEFLSLAWNDVPLLTVSSWR* 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17624576 17626189 + Chy7G141240.1 Chy07g01294 231305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01294 537 Pfam GRAS domain family 166 537 IPR005202 -
Chy07g01294 537 ProSiteProfiles GRAS family profile. 155 537 IPR005202 -
Chy07g01294 537 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 165 536 - -
Chy07g01294 537 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 165 536 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01294 - - - csv:101211368 1000.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy02g00656 Chy07g01294 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00656 Chy-Chr2:3981224 Chy07g01294 Chy-Chr7:17624576 0 dispersed
Chy07g01294 Chy-Chr7:17624576 Chy03g00094 Chy-Chr3:912130 4.10E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g933 Blo04g00926 . . . Bpe15g00438 . . . Cmo04g00840 Cmo16g00706 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0754 . . . . Chy07g01294 . . . . . . . . . . . . Cma16g00649 . . . . Cpe14g00553 . . . . . . . Cla07g00854 Cam07g0926 Cec07g0991 Cco07g0968 Clacu07g0901 Cmu07g0901 Cre07g1267 Lsi07g00218 Csa04g00523 . .
Vvi4g959 . . Bda04g00052 . . Bpe13g00449 . . Cmo04g00840 Cmo16g00713 Cma03g00756 Cma07g00493 Car03g00690 Car07g00433 Sed10g0914 Cpe19g00807 Cpe10g00605 Bhi03g01287 Tan03g1972 Cmetu08g0213 . Hepe04g1503 . . Cla01g01901 Cam01g1990 . . Clacu01g2009 Cmu01g1880 . . . Cone6ag1617 Cone9ag1542 Lsi01g00680 . Chy07g01294 Cme08g00842 Blo05g00794 . Bda11g01872 . . . . Bma06g00126 . Cmo03g00782 Cmo07g00492 Cma16g00656 . . . . Cpe14g00561 . . . . . . . Cla07g00872 Cam07g0944 Cec07g1011 Cco07g0988 Clacu07g0918 Cmu07g0917 Cre07g1288 Lsi07g00202 Csa06g03233 Chy02g00656 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g02153 . 74 752 GRAS Transcription Factor Family AT2G37650 54.0 7.9e-199 690.6
Chy12g00215 . 316 698 GRAS Transcription Factor Family AT3G46600 56.1 9.1e-126 447.6
Chy02g00853 . 21 441 GRAS Transcription Factor Family AT3G49950 60.4 6.5e-137 484.2
Chy07g01075 . 39 438 GRAS Transcription Factor Family AT5G41920 67.5 1.3e-148 523.1
Chy08g00536 . 462 838 GRAS Transcription Factor Family AT5G41920 56.6 3.1e-115 412.1
Chy02g00656 CCT 1 610 GRAS Transcription Factor Family AT5G66770 58.8 3.5e-184 641.7
Chy07g01294 CCT 8 538 GRAS Transcription Factor Family AT5G66770 58.5 4.9e-162 568.2
Chy11g00700 . 57 546 GRAS Transcription Factor Family AT1G50600 59.6 8.9e-163 570.5
Chy06g01877 . 46 544 GRAS Transcription Factor Family AT1G50600 57.1 3.9e-158 555.1
Chy02g00456 . 103 542 GRAS Transcription Factor Family AT1G50600 55.6 6.2e-140 494.6
Chy04g01026 . 203 594 GRAS Transcription Factor Family AT1G50600 57.7 5.6e-133 471.5
Chy09g00844 . 44 581 GRAS Transcription Factor Family AT1G14920 68.4 1.4e-208 722.6
Chy09g00488 . 53 600 GRAS Transcription Factor Family AT1G14920 61.1 5.1e-182 634.4
Chy06g01359 . 30 554 GRAS Transcription Factor Family AT1G14920 55.1 4.5e-154 541.6
Chy06g01964 . 2 259 GRAS Transcription Factor Family AT1G55580 55.8 1.4e-79 293.9
Chy09g00488 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 1.9e-181 632.5
Chy09g00844 . 1 579 GRAS Transcription Factor Family AT1G66350 56.8 4.1e-173 604.7
Chy06g01359 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 2.7e-156 548.9
Chy11g00700 . 19 546 GRAS Transcription Factor Family AT5G48150 65.7 3.1e-194 674.9
Chy06g01877 . 19 544 GRAS Transcription Factor Family AT5G48150 57.4 2.5e-167 585.5
Chy02g00456 . 15 542 GRAS Transcription Factor Family AT5G48150 51.7 2.0e-148 522.7
Chy04g01026 . 103 594 GRAS Transcription Factor Family AT5G48150 51.0 3.5e-137 485.3
Chy09g00844 . 46 578 GRAS Transcription Factor Family AT2G01570 69.3 3.0e-212 734.9
Chy09g00488 . 55 598 GRAS Transcription Factor Family AT2G01570 62.6 1.4e-188 656.4
Chy06g01359 . 30 554 GRAS Transcription Factor Family AT2G01570 55.8 5.6e-158 554.7
Chy09g00488 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 1.9e-181 632.5
Chy09g00844 . 1 579 GRAS Transcription Factor Family AT1G66350 56.8 4.1e-173 604.7
Chy06g01359 . 1 553 GRAS Transcription Factor Family AT1G66350 54.8 2.7e-156 548.9
Chy09g00488 . 55 598 GRAS Transcription Factor Family AT3G03450 62.0 1.9e-179 625.9
Chy09g00844 . 46 578 GRAS Transcription Factor Family AT3G03450 60.0 7.8e-170 594.0
Chy06g01359 . 30 554 GRAS Transcription Factor Family AT3G03450 56.7 2.3e-153 539.3
Chy09g00488 . 48 600 GRAS Transcription Factor Family AT5G17490 56.6 4.1e-160 561.6
Chy09g00844 . 42 578 GRAS Transcription Factor Family AT5G17490 56.8 1.8e-155 546.2
Chy06g01359 . 26 554 GRAS Transcription Factor Family AT5G17490 51.7 1.7e-134 476.5
Chy01g01269 . 1 571 GRAS Transcription Factor Family AT1G21450 57.5 1.6e-173 606.3
Chy06g01877 . 168 544 GRAS Transcription Factor Family AT1G21450 51.1 6.8e-111 398.3
Chy04g01026 . 226 594 GRAS Transcription Factor Family AT1G21450 50.3 4.6e-107 385.6
Chy12g00215 . 324 698 GRAS Transcription Factor Family AT5G59450 56.5 7.0e-127 451.4
Chy02g00456 . 1 541 GRAS Transcription Factor Family AT4G17230 58.3 8.6e-174 607.1
Chy06g01877 . 49 544 GRAS Transcription Factor Family AT4G17230 52.1 5.1e-134 474.9
Chy04g01026 . 221 594 GRAS Transcription Factor Family AT4G17230 52.1 1.4e-110 397.1
Chy11g00700 . 134 546 GRAS Transcription Factor Family AT2G04890 66.0 7.2e-160 560.5
Chy06g01877 . 148 544 GRAS Transcription Factor Family AT2G04890 58.7 4.9e-140 494.6
Chy04g01026 . 207 594 GRAS Transcription Factor Family AT2G04890 55.7 4.7e-127 451.4
Chy02g00456 . 161 542 GRAS Transcription Factor Family AT2G04890 58.1 4.4e-125 444.9
Chy02g01488 . 1 472 GRAS Transcription Factor Family AT1G50420 66.2 9.3e-175 610.1
Chy10g01343 . 639 1078 GRAS Transcription Factor Family AT1G50420 59.8 4.2e-143 505.0
Chy06g02042 . 343 706 GRAS Transcription Factor Family AT4G00150 55.7 9.0e-105 377.9
Chy02g00656 CCT 1 610 GRAS Transcription Factor Family AT3G50650 51.1 3.6e-151 531.9
Chy07g01294 CCT 9 538 GRAS Transcription Factor Family AT3G50650 53.4 1.0e-145 513.8
Chy08g00536 . 184 836 GRAS Transcription Factor Family AT3G54220 60.1 1.5e-204 709.5
Chy07g01075 . 71 439 GRAS Transcription Factor Family AT3G54220 64.5 1.8e-136 483.4
Chy02g00841 . 90 490 GRAS Transcription Factor Family AT4G37650 67.3 6.0e-159 557.8
Chy11g00187 . 104 496 GRAS Transcription Factor Family AT4G37650 56.3 2.0e-125 446.4
Chy11g01923 . 31 422 GRAS Transcription Factor Family AT4G37650 50.1 1.0e-110 397.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002167 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 2 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18347 PF03514 GRAS 3.10E-108 CL0063 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01294 Chy_Chr07 FPKM 27.761599 30.773933 36.487835 35.452892 59.568699 64.123756 55.001385 5.661426 6.013622 5.307196