Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01301 ATGGAATCCGCAGCTCACGTTGCTCTTATTTCCAGCCCCGGAATGGGCCATCTTTTCCCCGCCCTCGAGTTCGCCACGCGCCTCTCCACGCGCCACCGTCTCACCGTCACTGTTTTCATCGTCCCCTCCCACTCCTCCTCCGCCGAAAACAAAGTAGTCGCCGCCGCTCAAGCAGCCGGTCTCTTCACCGTCGTCGAACTTCCTCCCGCCGACATGTCTGATGTCACTGAATCCTCCGTTGTCGGCCGCCTCGCCATCACCATGCGCCGCCATGTCCCGATACTCCGCTCCGCAGTCTCCGCCATGACCTCCCCTCCCTCCGTCCTCATTGCTGATATCTTCTCCATCGAATCCTTCGCCGTCGCCGAGGAGTTCAACATGAAGAAATACGCGTTCGTTGCCTCCAATGCATGGTTCTTAGCCGTCATGGTTTACGCTCAGGTGTGGGACAGGGAGATCGTTGGGCAGTACGTGGACCAGAAAGAACCGCTTCAAATCCCAGGATGCGAATCGGTTCGGCCATGCGATGTTATCGACCCACTTCTGGACCGGACCGAACAGCAATATTTCGAAATCTTGAAATTGGGGATGGGGATAGCATCGAGCGACGGCGTTTTGGTTAACACGTGGGATGAGTTGCAAGATCGCACGCTCGCATCTTTAAACGACCGGAATCTGTTGGGTAAAATCTCTCCGCCGGTTTACTCTATTGGACCAATCGTGAGGCAGCCCGGTTGGGAGAAAGGCGGTTCGAGTGAGTTGTTTAATTGGTTGAGTAAGCAACCCAGTGAGTCGGTGATCTACGTGTCGTTTGGGAGCGGTGGAACGCTGTCGTTTGAGCAAATGACAGAAGTGGCTCACGGCTTGGAGATGAGTCGGCAGAGATTTGTTTGGGTTGTACGCGCCCCAAAGGTAAGATCGGACGGTGCGTTTTTTACGACGGGAGACGGGAGTGAGGAGCAATCGTTGGCGAAGTTTTTGCCAGAGGGATTTTTGGAACGCACGAGCGAGTAA 1014 55.23 MESAAHVALISSPGMGHLFPALEFATRLSTRHRLTVTVFIVPSHSSSAENKVVAAAQAAGLFTVVELPPADMSDVTESSVVGRLAITMRRHVPILRSAVSAMTSPPSVLIADIFSIESFAVAEEFNMKKYAFVASNAWFLAVMVYAQVWDREIVGQYVDQKEPLQIPGCESVRPCDVIDPLLDRTEQQYFEILKLGMGIASSDGVLVNTWDELQDRTLASLNDRNLLGKISPPVYSIGPIVRQPGWEKGGSSELFNWLSKQPSESVIYVSFGSGGTLSFEQMTEVAHGLEMSRQRFVWVVRAPKVRSDGAFFTTGDGSEEQSLAKFLPEGFLERTSE* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17672714 17675184 - Chy7G141310.1 Chy07g01301 231312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01301 337 PANTHER GLYCOSYLTRANSFERASE 2 337 - -
Chy07g01301 337 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 3 336 - -
Chy07g01301 337 PANTHER UDP-GLYCOSYLTRANSFERASE 72C1 2 337 - -
Chy07g01301 337 CDD GT1_Gtf-like 5 309 IPR002213 GO:0008194
Chy07g01301 337 Gene3D Glycogen Phosphorylase B; 6 238 - -
Chy07g01301 337 Gene3D Glycogen Phosphorylase B; 252 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01301 K12356 UGT72E; coniferyl-alcohol glucosyltransferase [EC:2.4.1.111] - csv:101214511 644.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00114 Chy-Chr6:746606 Chy07g01301 Chy-Chr7:17672714 9.18E-66 dispersed
Chy07g01301 Chy-Chr7:17672714 Chy12g01130 Chy-Chr12:16269839 5.73E-32 dispersed
Chy02g00672 Chy-Chr2:4083527 Chy07g01301 Chy-Chr7:17672714 2.92E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g919 . . . . . . . Bma15g01011 Cmo04g00845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g234 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g00193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01301 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003276 1 1 1 2 2 2 2 2 2 1 2 2 2 1 1 2 2 4 2 2 1 2 1 1 1 1 1 1 1 4 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01301 Chy_Chr07 FPKM 18.203703 19.356775 10.020793 7.171396 20.662521 23.15398 20.536774 16.2875 18.396669 19.070023