Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy07g01327 ATGATGGTGGAGTTCCATGGAGAAATCCGATCCCATAACGATGAAGACAACCGAGACCAAGATCCAGAAGAGGAAATTAGCTACGATGATCTCAAGAAACGAATGTGGAGAGATCGACAACGGATGAAGAAGATGAAGGAGAGGCATGATGAAGAAGAGCCTGAATCTGTTGCAAGAGAAGAAGCTTCTCGCCGTAAGAAAATGGCTAGAGCTCAAGATTCCATTCTTAAGTGCATGGATAAAATCATGGAAGCTTGTAAAGCTCAAGGGTTTGTTTATGGAATCGTCCCAGAAAAGGGAAAACCGGTCACTGGCTCTTCCGAGAGCCTCCGTGAATGGTGGAAAGATGATGTCCGATTCGAACAAGATGCTCCAATGGCCATAGCGAAATTTCTCCCCAAAGTATTTGAAGAATCAGGGATTGATCCCAATTCATTTTTGCATTTACTCACCGATTTACAGGACACAACATTGGGATCCATTCTCTCCGCTTTGATGCAGCACTGTATTCCTCCACAGAGGAAATTCCCACTGGAAAAGGGTTTAGCGCCGCCATGGTGGCCGACGGGTAACGAGCTTTGGTGGGGTGAACAGGGCGCCGCCGGTGGTCATGGTGTTCCCCCGTATAAAAAGCCCCACGATCTCAAAAAGGCGTGGAAAATCAGTGTCTTGGCGGCGGTGATTAAACACATGTCGCCTGATTTAGACAACATGAGGAAATTAATTAGGCAATCGAAGAATTTACAAGCGAAAATGACAGCAAGAGAGACACTCACCTGGTCTAAAGTTGTGAATCAAGAAGAAGCTCTGATGAACTTAACAAAAAAGAGCTTAAGAATCTCCGACGAAGAAGAAGACGAAGAAGAAGACGAAGAAGAAGAACACAACAAAAACAGAGATAAACAGAGCAGCGATGAGATTATGACGAAACGAAAGTGTGTATTCGAACAAGAACCCATATTGGAATCGTTGTTATACCCTTGCCAGAATCAATGGTGTCCGCAGAGTGAAGCGGTAATGGGATTTATGGACAAGAAAGCAAGAACAGAGCATGAGACACAGTGCATTTGCGGAGGAGATAGGTCAGAGGAATTTTCGGACGAGCAATCGATCGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAGCTGGGGAGGGCGGAGGCGGGGAGTGAGGAGGCGAGGATAGAAGATGCTGGAGATGGGTCGGGGAGCAGCACGGTGGAGGATTACGGGAGTGGGTACTGGAATATGGATTTGAATGCGAGTCCGGCGGAGGATTTGAGTGGGCAACAACAAGATTCTACTTCTATTTGGGATTTGAGATATGATTGGGGAGCTGAAGAATAA 1356 46.46 MMVEFHGEIRSHNDEDNRDQDPEEEISYDDLKKRMWRDRQRMKKMKERHDEEEPESVAREEASRRKKMARAQDSILKCMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWKDDVRFEQDAPMAIAKFLPKVFEESGIDPNSFLHLLTDLQDTTLGSILSALMQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGAAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDLDNMRKLIRQSKNLQAKMTARETLTWSKVVNQEEALMNLTKKSLRISDEEEDEEEDEEEEHNKNRDKQSSDEIMTKRKCVFEQEPILESLLYPCQNQWCPQSEAVMGFMDKKARTEHETQCICGGDRSEEFSDEQSIDTHLKSVVEWMNWELGRAEAGSEEARIEDAGDGSGSSTVEDYGSGYWNMDLNASPAEDLSGQQQDSTSIWDLRYDWGAEE* 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17963103 17964458 + Chy7G141570.1 Chy07g01327 231338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy07g01327 451 Gene3D - 140 277 IPR023278 GO:0003700|GO:0005634
Chy07g01327 451 Gene3D - 57 137 IPR023278 GO:0003700|GO:0005634
Chy07g01327 451 MobiDBLite consensus disorder prediction 43 66 - -
Chy07g01327 451 MobiDBLite consensus disorder prediction 417 437 - -
Chy07g01327 451 SUPERFAMILY DNA-binding domain of EIN3-like 147 271 IPR023278 GO:0003700|GO:0005634
Chy07g01327 451 Coils Coil 28 48 - -
Chy07g01327 451 Pfam Ethylene insensitive 3 29 268 IPR006957 GO:0005634
Chy07g01327 451 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 14 446 - -
Chy07g01327 451 MobiDBLite consensus disorder prediction 275 306 - -
Chy07g01327 451 MobiDBLite consensus disorder prediction 393 412 - -
Chy07g01327 451 Coils Coil 281 301 - -
Chy07g01327 451 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 446 IPR006957 GO:0005634
Chy07g01327 451 MobiDBLite consensus disorder prediction 1 17 - -
Chy07g01327 451 MobiDBLite consensus disorder prediction 1 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy07g01327 K14514 EIN3; ethylene-insensitive protein 3 - csv:116406095 870.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01432 Chy-Chr2:11375566 Chy07g01327 Chy-Chr7:17963103 4.21E-93 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g01376 . 2 628 EIL Transcription Factor Family AT2G27050 58.1 2.1e-189 659.1
Chy02g01432 . 44 350 EIL Transcription Factor Family AT2G27050 59.3 2.3e-95 346.7
Chy02g01432 . 44 578 EIL Transcription Factor Family AT1G73730 54.7 3.0e-145 512.3
Chy02g01376 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 3.4e-104 375.9
Chy07g01327 . 23 271 EIL Transcription Factor Family AT1G73730 54.7 1.1e-75 281.2
Chy02g01376 . 3 628 EIL Transcription Factor Family AT3G20770 62.3 1.4e-207 719.5
Chy02g01432 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.8e-98 357.1
Chy02g01432 . 83 288 EIL Transcription Factor Family AT5G65100 59.8 1.1e-70 264.6
Chy07g01327 . 21 368 EIL Transcription Factor Family AT5G10120 57.4 5.4e-103 371.7
Chy02g01432 . 44 290 EIL Transcription Factor Family AT5G10120 55.6 1.5e-73 273.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18352 PF04873 EIN3 1.50E-109 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy07g01327 Chy_Chr07 FPKM 18.927801 19.523714 12.576099 16.109587 5.907747 5.520894 6.736101 0.336725 0.244057 0.258133